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[184343_at]

Description F55C12.6 /REP_DB=WormBase Gene ID /WP=CE02775 /TR=Q20811 /GB=AAC71165.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 10
(-3)
A 		75.7
(2.7)
A 		56.9
(1.1)
A 		78.8
(3)
P 		69
B 6.4
(-3)
A 		52.2
(3)
A 		19.3
(-1.3)
A 		48.2
(2.5)
P 		46
C 13.6
(-3)
A 		83.4
(1.2)
P 		31.4
(-1.9)
A 		114
(3)
P 		100
avr 10
(-3) 		70.4
(2.2) 		35.9
(-0.8) 		80.3
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 17.7
(-3)
A 		30.6
(-1)
P 		53.6
(2.7)
P 		30
(-1)
A 		55.5
(3)
P 		20
(-2.6)
A 		38
B 23.7
(-3)
A 		27.4
(-2.5)
P 		42.5
(-0.7)
A 		48.7
(0.1)
A 		71.9
(3)
P 		39.1
(-1.1)
P 		48
C 42.1
(-0.2)
P 		65.7
(3)
P 		22.1
(-3)
A 		33.1
(-1.5)
A 		56.6
(1.7)
A 		32.1
(-1.6)
A 		44
avr 27.8
(-3) 		41.2
(-0.6) 		39.4
(-0.9) 		37.3
(-1.3) 		61.3
(3) 		30.4
(-2.5) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 3.6
(-3)
A 		16.4
(3)
A 		14.9
(2.3)
A 		11.5
(0.7)
P 		13
B 2
(-3)
A 		12.9
(3)
A 		4.5
(-1.6)
A 		10.3
(1.6)
P 		11
C 4.5
(-3)
A 		24
(3)
P 		11
(-1)
A 		19.2
(1.5)
P 		20
avr 3.4
(-3) 		17.8
(3) 		10.1
(-0.2) 		13.7
(1.3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 3.3
(-3)
A 		10.9
(0.4)
P 		11.7
(0.8)
P 		7.6
(-1.1)
A 		16.7
(3)
P 		4.9
(-2.3)
A 		13
B 8.3
(-3)
A 		9.1
(-2.8)
P 		10.3
(-2.4)
A 		12.9
(-1.7)
A 		29.2
(3)
P 		14.6
(-1.2)
P 		21
C 15.6
(1.1)
P 		20.1
(3)
P 		5.6
(-3)
A 		6.7
(-2.5)
A 		18.3
(2.3)
A 		10.8
(-0.8)
A 		15
avr 9.1
(-3) 		13.4
(-0.9) 		9.2
(-3) 		9.1
(-3) 		21.4
(3) 		10.1
(-2.5) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184343_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4165
Sequence Type Exemplar sequence
Representative Public ID F55C12.6 NCBI
Target Description F55C12.6 /REP_DB=WormBase Gene ID /WP=CE02775 /TR=Q20811 /GB=AAC71165.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062772(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062772 NCBI Caenorhabditis elegans F55C12.6 (F55C12.6) mRNA, complete cds. 11/11 None
SNAP00000011034 ENSEMBL cdna:SNAP chromosome:CEL140:II:5874972:5876065:-1 11/11 None
GENEFINDER00000011039 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5874471:5876623:-1 11/11 None
F55C12.6 ENSEMBL cdna:known chromosome:CEL140:II:5874972:5876065:-1 gene:F55C12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5874968-5876620(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55C12.6
Entrez Gene 186303 Entrez gene
WormBase CE38963 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71165 Hypothetical protein F55C12.6 [Caenorhabditis elegans] 0.0
blast NP_495173 F55C12.6 [Caenorhabditis elegans] 1.0E-166
blast AAC71165 Hypothetical protein F55C12.6 [Caenorhabditis elegans] 1.0E-166
blast CAE59215 Hypothetical protein CBG02528 [Caenorhabditis briggsae] 1.0E-138
blast CAE59215 Hypothetical protein CBG02528 [Caenorhabditis briggsae] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR009658 EMBL-EBI Protein of unknown function DUF1248 8.7E-112
Pfam IPR009658 EMBL-EBI Protein of unknown function DUF1248 8.6E-112
Pfam IPR009658 EMBL-EBI Protein of unknown function DUF1248 8.6E-112
Sequence
Target Sequence 
>C. ELEGANS:184343_AT
gtacaaatctttgggacttcagccagattttcgtcatcttggaatggcatgggttcctga
aaaatatcgtggaaagagtattctgaaagttgtcactgattatttaatacaagaagaacg
aatgaaacaccagaatatgctggcatgtaatgtgcattggtctcagaacttttggttaaa
agctacagggagaagtgatattggtgcatgtacatattatatatcgtattatgaattgta
tgattttaaagttccaattccaaagattaaagatgattgtgaaattgttgtcaagaatgt
caacacaaaaacagtcactgatgtcttgaaatatgatacttcaatatttccattcaatcg
gaaaaattggatagaatcactttttctcgaaggtattggaagagttgcatataattctga
tggaaatgttgttggaattggatgtctatctacttatccatcaggagaatgtgtgataag
tccgttgtatgctgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACAAATCTTTGGGACTTCAGCCA 181 461 315 Antisense
GGACTTCAGCCAGATTTTCGTCATC 252 525 328 Antisense
GATTTTCGTCATCTTGGAATGGCAT 25 429 340 Antisense
GAATGGCATGGGTTCCTGAAAAATA 671 329 356 Antisense
GTATTCTGAAAGTTGTCACTGATTA 622 451 392 Antisense
GTAATGTGCATTGGTCTCAGAACTT 152 463 461 Antisense
AAACAGTCACTGATGTCTTGAAATA 226 129 623 Antisense
GAATCACTTTTTCTCGAAGGTATTG 556 325 688 Antisense
GTTGGAATTGGATGTCTATCTACTT 568 435 745 Antisense
TGTCTATCTACTTATCCATCAGGAG 450 557 757 Antisense
GTGATAAGTCCGTTGTATGCTGATA 104 485 787 Antisense
Sequence Source Affymetrix Proprietary Database