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[184342_at]

Description F56F11.5 /REP_DB=WormBase Gene ID /WP=CE19469 /TR=Q9TZ66 /GB=AAK21410.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 15      4grp_high_8_8 > 11      6grp_total > 26      4grp_total > 07      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 76.4
(0.6)
P 		47.2
(-3)
A 		96.3
(3)
P 		74.4
(0.3)
P 		49
B 79.1
(-1.1)
P 		95.6
(1.4)
P 		66.4
(-3)
M 		106.1
(3)
P 		40
C 86.1
(3)
P 		57.8
(-2.5)
P 		55.1
(-3)
P 		71.9
(0.3)
P 		31
avr 80.5
(1.7) 		66.9
(-3) 		72.6
(-1) 		84.1
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 96.5
(3)
P 		67.5
(-0.1)
P 		41.1
(-3)
A 		45.2
(-2.6)
P 		69
(0)
P 		59.9
(-1)
P 		55
B 54.8
(0.8)
P 		82.3
(3)
P 		25.6
(-1.6)
A 		8.7
(-3)
A 		59.8
(1.2)
P 		54.4
(0.7)
P 		74
C 82.8
(2.8)
P 		84.9
(3)
P 		62.7
(0.6)
P 		71.8
(1.6)
P 		29.2
(-3)
A 		55.3
(-0.2)
P 		56
avr 78
(3) 		78.2
(3) 		43.1
(-2.8) 		41.9
(-3) 		52.7
(-1.2) 		56.5
(-0.6) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 27.8
(3)
P 		10.2
(-3)
A 		25.2
(2.1)
P 		10.9
(-2.8)
P 		18
B 25.2
(3)
P 		23.6
(2)
P 		15.4
(-3)
M 		22.6
(1.4)
P 		10
C 28.5
(3)
P 		16.6
(-1.4)
P 		19.2
(-0.4)
P 		12.1
(-3)
P 		16
avr 27.2
(3) 		16.8
(-2.2) 		19.9
(-0.7) 		15.2
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 17.8
(0.5)
P 		24
(3)
P 		8.9
(-3)
A 		11.5
(-2)
P 		20.8
(1.7)
P 		14.6
(-0.7)
P 		15
B 19.1
(1)
P 		27.4
(3)
P 		6.2
(-2.1)
A 		2.3
(-3)
A 		24.3
(2.3)
P 		20.3
(1.3)
P 		25
C 30.7
(3)
P 		25.9
(1.6)
P 		16
(-1.2)
P 		14.4
(-1.6)
P 		9.5
(-3)
A 		18.5
(-0.5)
P 		21
avr 22.5
(1.8) 		25.8
(3) 		10.4
(-2.6) 		9.4
(-3) 		18.2
(0.2) 		17.8
(0.1) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184342_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7848
Sequence Type Exemplar sequence
Representative Public ID F56F11.5 NCBI
Target Description F56F11.5 /REP_DB=WormBase Gene ID /WP=CE19469 /TR=Q9TZ66 /GB=AAK21410.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065229(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065229 NCBI Caenorhabditis elegans F56F11.5 (F56F11.5) mRNA, complete cds. 11/11 None
F56F11.5 ENSEMBL cdna:known chromosome:CEL140:III:2850986:2855409:-1 gene:F56F11.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000006311 8/11 Cross Hyb Matching Probes None
SNAP00000006300 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2850985-2855409(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56F11.5
Entrez Gene 186408 Entrez gene
SwissProt Q9TZ66 EMBL-EBI
WormBase CE36169 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21410 Hypothetical protein F56F11.5 [Caenorhabditis elegans] ref|NP_497630.2| F56F11.5 [Caenorhabditis elegans] 0.0
blast AAF60501 Hypothetical protein Y38C1AB.6 [Caenorhabditis elegans] gb|AAF60498.1| Hypothetical protein Y38C1AB.2 [Caenorhabditis elegans] ref|NP_499852.1| Y38C1AB.6 [Caenorhabditis elegans] ref|NP_499855.1| Y38C1AB.2 [Caenorhabditis elegans] 1.0E-140
blast CAE58492 Hypothetical protein CBG01637 [Caenorhabditis briggsae] 2.0E-63
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497630.2 6 239-256,269-286,296-318,344-366,430-452,484-506
F56F11.5 6 239-256,269-286,296-318,344-366,430-452,484-506
Sequence
Target Sequence 
>C. ELEGANS:184342_AT
caacagtctcaacgctgcggtctttggaattcatcaaatcactcggattttttgttcaca
ttttgaaaaaaatgatgaaaactgttggaatgtttgtctttatattctgcacattttggt
tcgttcttgcggtcgttcatgtcagtatttcaagatcgatgttctcatccgataacactt
tcttgtacattcttggatctcaaggaaaattcgaaatttttggagaggtacaagatgatg
accgacttggcaatctgccgaactgcaacggctataatcgcaccatttctgatattgtta
agatggattatgctgaggctagctgcttaattcgcagttcaatcatgccgttcctggtgt
ttggctacattttcatatccggaattcttctagtcaaccttttaactgctcaactcacaa
tcgattcgaagtttgttttgccagcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACAGTCTCAACGCTGCGGTCTTT 279 189 959 Antisense
CACATTTTGGTTCGTTCTTGCGGTC 699 193 1068 Antisense
TCTTGCGGTCGTTCATGTCAGTATT 99 619 1083 Antisense
TTCTCATCCGATAACACTTTCTTGT 520 691 1120 Antisense
GATGACCGACTTGGCAATCTGCCGA 578 411 1195 Antisense
GCTGAGGCTAGCTGCTTAATTCGCA 248 295 1270 Antisense
TTCGCAGTTCAATCATGCCGTTCCT 521 695 1289 Antisense
TGCCGTTCCTGGTGTTTGGCTACAT 295 583 1304 Antisense
ATCCGGAATTCTTCTAGTCAACCTT 64 39 1335 Antisense
AACTGCTCAACTCACAATCGATTCG 37 143 1362 Antisense
GATTCGAAGTTTGTTTTGCCAGCGC 91 433 1381 Antisense
Sequence Source Affymetrix Proprietary Database