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[184340_at]

Description Y56A3A.10 /REP_DB=WormBase Gene ID /WP=CE24465 /TR=Q9U219 /GB=CAB60522.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 40      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.6
(-3)
A 		0.9
(1.5)
A 		0.7
(-1.5)
A 		1
(3)
A 		0
B 0.6
(-3)
A 		1.3
(0.2)
A 		1.9
(3)
A 		0.7
(-2.5)
A 		1
C 0.4
(-3)
A 		0.8
(1.8)
A 		0.6
(-0.6)
A 		0.9
(3)
A 		1
avr 0.5
(-3) 		1
(2) 		1.1
(3) 		0.9
(1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 0.8
(-2.2)
A 		0.5
(-2.7)
A 		0.3
(-3)
A 		0.8
(-2.2)
A 		1
(-1.9)
A 		4.1
(3)
A 		4
B 0.6
(-2.3)
A 		0.6
(-2.3)
A 		0.9
(-1.2)
A 		0.9
(-1.2)
A 		0.4
(-3)
A 		2.1
(3)
A 		2
C 0.7
(-2.9)
A 		1.1
(-2.8)
A 		1.1
(-2.8)
A 		0.7
(-2.9)
A 		0.5
(-3)
A 		17.6
(3)
A 		17
avr 0.7
(-2.9) 		0.7
(-2.9) 		0.8
(-2.8) 		0.8
(-2.8) 		0.6
(-3) 		7.9
(3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 0
1 2 3 4 range
A 0.2
(3)
A 		0.2
(3)
A 		0.2
(3)
A 		0.1
(-3)
A 		0
B 0.2
(-3)
A 		0.3
(-0)
A 		0.4
(3)
A 		0.2
(-3)
A 		0
C 0.1
(-3)
A 		0.2
(3)
A 		0.2
(3)
A 		0.1
(-3)
A 		0
avr 0.2
(0) 		0.2
(0) 		0.3
(3) 		0.1
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.2
(-2.3)
A 		0.2
(-2.3)
A 		0.1
(-3)
A 		0.2
(-2.3)
A 		0.3
(-1.7)
A 		1
(3)
A 		1
B 0.2
(-2.1)
A 		0.2
(-2.1)
A 		0.2
(-2.1)
A 		0.2
(-2.1)
A 		0.1
(-3)
A 		0.8
(3)
A 		1
C 0.3
(-2.8)
A 		0.3
(-2.8)
A 		0.3
(-2.8)
A 		0.1
(-3)
A 		0.1
(-3)
A 		5.9
(3)
A 		6
avr 0.2
(-3) 		0.2
(-3) 		0.2
(-3) 		0.2
(-3) 		0.2
(-3) 		2.6
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184340_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6693
Sequence Type Exemplar sequence
Representative Public ID Y56A3A.10 NCBI
Target Description Y56A3A.10 /REP_DB=WormBase Gene ID /WP=CE24465 /TR=Q9U219 /GB=CAB60522.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067139(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067139 NCBI Caenorhabditis elegans Y56A3A.10 (Y56A3A.10) mRNA, complete cds. 11/11 None
SNAP00000035191 ENSEMBL cdna:SNAP chromosome:CEL140:III:11882470:11883415:-1 11/11 None
Y56A3A.10 ENSEMBL cdna:known chromosome:CEL140:III:11882470:11883415:-1 gene:Y56A3A.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000035241 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11907400-11908346(+) 93.8 93.8
chrIII:11882465-11883411(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y56A3A.10
Entrez Gene 190327 Entrez gene
SwissProt Q9U219 EMBL-EBI
WormBase CE24465 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60522 Hypothetical protein Y56A3A.10 [Caenorhabditis elegans] ref|NP_499540.1| Y56A3A.10 [Caenorhabditis elegans] 1.0E-176
blast CAB60508 Hypothetical protein Y56A3A.14 [Caenorhabditis elegans] ref|NP_499546.1| Y56A3A.14 [Caenorhabditis elegans] 1.0E-150
blast CAB60509 Hypothetical protein Y56A3A.15 [Caenorhabditis elegans] ref|NP_499547.1| Y56A3A.15 [Caenorhabditis elegans] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.9E-7
Sequence
Target Sequence 
>C. ELEGANS:184340_AT
ggaaactgttgcagtcgatattgcatcttctgaaattcaaagttgtcacctgcttaaact
gttcccttctttaagatatttggaagtttacaaagcaccaatcaatactcaaatcctttc
acacaatttatttcacctagaagttacgacaaaagtgacgcttaacgacattttgatttc
caattgttcgaacttctcgataagtggcaacgatgtttccgacatggaattgaatctttt
catgagatcatggattaaaggatccaatccccgtttaactaaattctgtatccataattc
gccaagggtacgagacccatatttcgaaaccttactatttcaaaacatgaattatattga
aactcacaagaataaatattggagaaccttcgaaatttcgagacccgatggaacaaaagc
aatcatcgagtggaatccagtctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAACTGTTGCAGTCGATATTGCA 76 529 438 Antisense
GTCGATATTGCATCTTCTGAAATTC 31 475 451 Antisense
AATACTCAAATCCTTTCACACAATT 244 173 541 Antisense
CCTTTCACACAATTTATTTCACCTA 228 269 552 Antisense
TATTTCACCTAGAAGTTACGACAAA 652 653 566 Antisense
ACGACAAAAGTGACGCTTAACGACA 200 91 583 Antisense
TCCGACATGGAATTGAATCTTTTCA 151 595 655 Antisense
GTTTAACTAAATTCTGTATCCATAA 265 449 710 Antisense
GTATCCATAATTCGCCAAGGGTACG 32 453 725 Antisense
GAGACCCATATTTCGAAACCTTACT 268 393 749 Antisense
AATCATCGAGTGGAATCCAGTCTAT 614 169 858 Antisense
Sequence Source Affymetrix Proprietary Database