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[184339_at]

Description Y62H9A.11 /REP_DB=WormBase Gene ID /WP=CE19247 /TR=Q9XWS5 /GB=CAA21570.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 9.5
(-2.3)
A 		3
(-2.9)
A 		2.3
(-3)
A 		67.5
(3)
A 		65
B 4.4
(-2.3)
A 		1.3
(-3)
A 		2.1
(-2.8)
A 		26.8
(3)
A 		26
C 4.3
(-2.8)
A 		1.9
(-3)
A 		2.4
(-2.9)
A 		61.7
(3)
P 		60
avr 6.1
(-2.5) 		2.1
(-3) 		2.3
(-3) 		52
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 7.4
(-1.8)
A 		8.8
(-1.5)
A 		29.5
(3)
M 		1.9
(-3)
A 		2.6
(-2.8)
A 		2.5
(-2.9)
A 		28
B 5.4
(-1.8)
A 		2.4
(-3)
A 		2.6
(-2.9)
A 		3.1
(-2.7)
A 		4.1
(-2.3)
A 		18
(3)
A 		16
C 3.7
(-2.8)
A 		31.1
(3)
A 		28.4
(2.4)
A 		3.8
(-2.8)
A 		2.8
(-3)
A 		3.7
(-2.8)
A 		28
avr 5.5
(-2.1) 		14.1
(0.9) 		20.2
(3) 		2.9
(-3) 		3.2
(-2.9) 		8.1
(-1.2) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.5
(-1.1)
A 		0.6
(-3)
A 		0.6
(-3)
A 		9.9
(3)
A 		9
B 1.4
(-1.8)
A 		0.3
(-3)
A 		0.5
(-2.8)
A 		5.7
(3)
A 		5
C 1.4
(-2.5)
A 		0.6
(-3)
A 		0.8
(-2.9)
A 		10.4
(3)
P 		10
avr 2.1
(-1.8) 		0.5
(-3) 		0.6
(-2.9) 		8.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.4
(-2.1)
A 		3.1
(-0.4)
A 		6.4
(3)
M 		0.5
(-3)
A 		0.8
(-2.7)
A 		0.6
(-2.9)
A 		6
B 1.9
(-1.7)
A 		0.8
(-2.8)
A 		0.6
(-3)
A 		0.8
(-2.8)
A 		1.7
(-1.9)
A 		6.7
(3)
A 		6
C 1.4
(-2.6)
A 		9.5
(3)
A 		7.2
(1.4)
A 		0.8
(-3)
A 		0.9
(-2.9)
A 		1.2
(-2.7)
A 		9
avr 1.6
(-1.7) 		4.5
(2.7) 		4.7
(3) 		0.7
(-3) 		1.1
(-2.4) 		2.8
(0.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184339_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17086
Sequence Type Exemplar sequence
Representative Public ID Y62H9A.11 NCBI
Target Description Y62H9A.11 /REP_DB=WormBase Gene ID /WP=CE19247 /TR=Q9XWS5 /GB=CAA21570.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077591(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077591 NCBI Caenorhabditis elegans Y62H9A.11 (Y62H9A.11) mRNA, complete cds. 11/11 None
GENEFINDER00000025467 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11905110:11908179:-1 11/11 None
Y62H9A.11 ENSEMBL cdna:known chromosome:CEL140:X:11905110:11907278:-1 gene:Y62H9A.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11905109-11907278(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y62H9A.11
Entrez Gene 190466 Entrez gene
SwissProt Q9XWS5 EMBL-EBI
WormBase CE19247 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21570 Hypothetical protein Y62H9A.11 [Caenorhabditis elegans] ref|NP_509992.1| Y62H9A.11 [Caenorhabditis elegans] 1.0E-171
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509992.1 1 12-34
Y62H9A.11 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:184339_AT
aatgctcgtttatgggaccagccaaaagtttggagttgtaaattttcacagcggagttga
actgttggaccttgtcattgcgtggtgcaggatgaaatttggggacgagatgaacaaaac
aagtgtctttcgtattggggcgtgcttggcagacaacgactcattgtcagatgaaatgcg
aaagtttcgctacgcagttgcaggattcggccataattttcctattgaagctagcaaacg
agaaaaactgaagacgtttggtaaacctactgatcttgcgtacgccatgaatactcttta
cgaagtatcgggttttgacttggtcttcgaaagcgacactgatgaatccaaatcgactaa
tcaggagaaaatttgtggaagaactttcggttcaaaatccaaaatattaagggtatttgt
gtattacatagataaaccgcaaaaatataaacgatattttttaaactttataaaagaaat
tgttattagaagggttaacgtgtttgtcattatgaattataatcaattgaaaacattttg
ggatacaactgctacacctttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCTCGTTTATGGGACCAGCCAA 466 165 306 Antisense
GCGGAGTTGAACTGTTGGACCTTGT 2 293 356 Antisense
TGGACCTTGTCATTGCGTGGTGCAG 509 547 371 Antisense
AGTGTCTTTCGTATTGGGGCGTGCT 285 3 427 Antisense
GGCGTGCTTGGCAGACAACGACTCA 264 541 444 Antisense
GAAAGTTTCGCTACGCAGTTGCAGG 557 359 485 Antisense
GATTCGGCCATAATTTTCCTATTGA 32 433 509 Antisense
TAAACCTACTGATCTTGCGTACGCC 396 631 567 Antisense
TGCGTACGCCATGAATACTCTTTAC 233 579 582 Antisense
GTATCGGGTTTTGACTTGGTCTTCG 467 453 610 Antisense
TGGGATACAACTGCTACACCTTTTA 544 553 844 Antisense
Sequence Source Affymetrix Proprietary Database