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[184338_s_at]

Description W06A11.2 /REP_DB=WormBase Gene ID /WP=CE05040 /TR=Q23181 /GB=AAA82410.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 0      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 30.3
(1.3)
A 		7.8
(-3)
A 		21.6
(-0.4)
A 		39.1
(3)
A 		31
B 9
(-1.9)
A 		12.2
(-1.2)
A 		30
(3)
A 		4.5
(-3)
A 		26
C 6.5
(-1.6)
A 		6.9
(-1.4)
A 		2.7
(-3)
A 		18.9
(3)
A 		16
avr 15.3
(0.2) 		9
(-3) 		18.1
(1.6) 		20.8
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 7.4
(-0.5)
A 		0.8
(-3)
A 		12.8
(1.6)
A 		16.6
(3)
A 		3.5
(-2)
A 		14.6
(2.2)
A 		16
B 29.9
(3)
A 		23.8
(1.7)
A 		2.5
(-3)
A 		6.5
(-2.1)
A 		13.3
(-0.6)
A 		20.9
(1)
A 		27
C 2.3
(-3)
A 		6.5
(-2)
A 		2.9
(-2.9)
A 		25.3
(2.3)
A 		8.9
(-1.5)
A 		28.1
(3)
A 		26
avr 13.2
(-0.2) 		10.4
(-1.3) 		6.1
(-3) 		16.1
(1) 		8.6
(-2) 		21.2
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 11
(3)
A 		1.7
(-3)
A 		5.7
(-0.4)
A 		5.7
(-0.4)
A 		9
B 2.9
(-1.1)
A 		3
(-1)
A 		6.9
(3)
A 		1
(-3)
A 		6
C 2.1
(0.1)
A 		2
(-0.1)
A 		0.9
(-3)
A 		3.2
(3)
A 		2
avr 5.3
(3) 		2.2
(-3) 		4.5
(1.5) 		3.3
(-0.9) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.4
(-1.3)
A 		0.3
(-3)
A 		2.8
(0.8)
A 		4.2
(3)
A 		1.1
(-1.8)
A 		3.6
(2.1)
A 		4
B 10.4
(3)
A 		7.9
(1.5)
A 		0.6
(-3)
A 		1.7
(-2.3)
A 		5.4
(-0.1)
A 		7.8
(1.4)
A 		10
C 0.9
(-2.9)
A 		2
(-2.1)
A 		0.7
(-3)
A 		5.1
(0)
A 		2.9
(-1.5)
A 		9.4
(3)
A 		9
avr 4.2
(0.1) 		3.4
(-0.8) 		1.4
(-3) 		3.7
(-0.5) 		3.1
(-1.1) 		6.9
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184338_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5531
Sequence Type Exemplar sequence
Representative Public ID W06A11.2 NCBI
Target Description W06A11.2 /REP_DB=WormBase Gene ID /WP=CE05040 /TR=Q23181 /GB=AAA82410.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062315(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062315 NCBI Caenorhabditis elegans W06A11.2 (W06A11.2) mRNA, complete cds. 11/11 None
SNAP00000019978 ENSEMBL cdna:SNAP chromosome:CEL140:II:4058950:4061122:-1 11/11 None
GENEFINDER00000019983 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4058950:4064051:-1 11/11 None
W06A11.2 ENSEMBL cdna:known chromosome:CEL140:II:4058950:4061692:-1 gene:W06A11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4058948-4061679(-) 88.43 100.0
Public Domain and Genome References
Gene Title
Ensembl W06A11.2
Entrez Gene 173745 Entrez gene
SwissProt Q23181 EMBL-EBI
WormBase CE05040 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82410 Hypothetical protein W06A11.2 [Caenorhabditis elegans] ref|NP_494716.1| W06A11.2 [Caenorhabditis elegans] 0.0
blast AAA82411 Hypothetical protein W06A11.3 [Caenorhabditis elegans] ref|NP_494717.1| W06A11.3 [Caenorhabditis elegans] 1.0E-90
blast AAB71019 Hypothetical protein F53G2.1 [Caenorhabditis elegans] ref|NP_494284.1| F53G2.1 [Caenorhabditis elegans] 2.0E-69
blast AAB71019 Hypothetical protein F53G2.1 [Caenorhabditis elegans] ref|NP_494284.1| F53G2.1 [Caenorhabditis elegans] 1.0E-64
blast CAA92801 Hypothetical protein C33A12.12 [Caenorhabditis elegans] emb|CAA22147.1| Hypothetical protein C33A12.12 [Caenorhabditis elegans] ref|NP_501674.1| C33A12.12 [Caenorhabditis elegans] emb|CAB16465.1| C33A12.12 [Caenorhabditis elegans] 3.0E-60
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000019983 1 342-364
Sequence
Target Sequence 
>C. ELEGANS:184338_S_AT
taggacgtggcttgggacgcaatgaaaaatatgtttcagttttgaatattctcacaccat
tagttgaatgttgtgacgaagcatgccacaatttagttgaacactatggacatcgtatac
tccttgtggatttgaaagatttccaacttacacgatttcagaattatgaaatgcttaaaa
tttttcatgacgatctgttcttttccgatattaaaaaaatgccaaaccggtgggaagaca
acagagcataccaagcattttcattccttgcccaattacaattcctttccgagagtcata
catttccacgtggattttggagttcagtagatacaatgatgatagattgcttcaagaaga
ttctagagaattgcgcaactttcgatatccatgagttctttttcacacgtggcattatcc
agaatattctgaaaacctcaaaatgcattggaccagtactttgggcattgctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGGACGTGGCTTGGGACGCAATGA 7 653 1784 Antisense
GACGAAGCATGCCACAATTTAGTTG 416 379 1858 Antisense
GGACATCGTATACTCCTTGTGGATT 191 525 1891 Antisense
CATGACGATCTGTTCTTTTCCGATA 340 207 1969 Antisense
AGAGCATACCAAGCATTTTCATTCC 464 69 2026 Antisense
TTTTCATTCCTTGCCCAATTACAAT 698 675 2041 Antisense
ATTACAATTCCTTTCCGAGAGTCAT 586 11 2058 Antisense
GAGAGTCATACATTTCCACGTGGAT 109 395 2074 Antisense
AATTGCGCAACTTTCGATATCCATG 685 177 2152 Antisense
ATGAGTTCTTTTTCACACGTGGCAT 368 45 2174 Antisense
GGACCAGTACTTTGGGCATTGCTGA 214 521 2233 Antisense
Sequence Source Affymetrix Proprietary Database