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[184337_at]

Description M01E10.3 /REP_DB=WormBase Gene ID /WP=CE19535 /TR=Q9TXR5 /GB=AAC68805.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 26.7
(-3)
A 		47.1
(3)
A 		41.2
(1.3)
A 		45.2
(2.4)
A 		20
B 39
(1.9)
P 		23.6
(-3)
A 		42.3
(3)
A 		26.6
(-2)
P 		19
C 30.8
(-2)
P 		38.2
(-1.4)
A 		18.5
(-3)
M 		92.9
(3)
P 		74
avr 32.2
(-3) 		36.3
(-1.9) 		34
(-2.5) 		54.9
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 33.9
(1.7)
A 		32.5
(1.5)
A 		26.3
(0.6)
P 		23.2
(0.2)
A 		42.6
(3)
M 		1.4
(-3)
A 		41
B 33.6
(0.2)
P 		25.8
(-3)
A 		32.8
(-0.1)
P 		34.4
(0.6)
M 		26.4
(-2.8)
P 		40.3
(3)
P 		15
C 27.7
(-1.5)
A 		23.1
(-2.6)
P 		47.6
(3)
P 		32.5
(-0.4)
A 		41.8
(1.7)
P 		21.3
(-3)
P 		26
avr 31.7
(1) 		27.1
(-0.7) 		35.6
(2.5) 		30
(0.4) 		36.9
(3) 		21
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 9.7
(1.4)
A 		10.2
(2.1)
A 		10.8
(3)
A 		6.6
(-3)
A 		4
B 12.5
(3)
P 		5.8
(-2.9)
A 		9.8
(0.6)
A 		5.7
(-3)
P 		7
C 10.2
(-0.6)
P 		11
(-0.1)
A 		6.5
(-3)
M 		15.7
(3)
P 		9
avr 10.8
(3) 		9
(-3) 		9
(-3) 		9.3
(-2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 6.2
(-0.2)
A 		11.6
(2.4)
A 		5.7
(-0.4)
P 		5.9
(-0.3)
A 		12.9
(3)
M 		0.3
(-3)
A 		13
B 11.7
(0.2)
P 		8.6
(-2.5)
A 		8
(-3)
P 		9.1
(-2.1)
M 		10.7
(-0.7)
P 		15
(3)
P 		7
C 10.3
(0.3)
A 		7
(-2.6)
P 		12.1
(1.8)
P 		6.5
(-3)
A 		13.5
(3)
P 		7.1
(-2.5)
P 		7
avr 9.4
(-0.5) 		9.1
(-0.8) 		8.6
(-1.4) 		7.2
(-3) 		12.4
(3) 		7.5
(-2.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184337_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8311
Sequence Type Exemplar sequence
Representative Public ID M01E10.3 NCBI
Target Description M01E10.3 /REP_DB=WormBase Gene ID /WP=CE19535 /TR=Q9TXR5 /GB=AAC68805.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065092(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065092 NCBI Caenorhabditis elegans M01E10.3 (M01E10.3) mRNA, complete cds. 11/11 None
GENEFINDER00000043030 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2053767:2054281:-1 9/11 None
SNAP00000043028 ENSEMBL cdna:SNAP chromosome:CEL140:III:2053864:2054281:-1 9/11 None
M01E10.3 ENSEMBL cdna:known chromosome:CEL140:III:2053860:2054437:-1 gene:M01E10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2053859-2054437(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01E10.3
Entrez Gene 187371 Entrez gene
SwissProt Q9TXR5 EMBL-EBI
WormBase CE19535 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68805 Hypothetical protein M01E10.3 [Caenorhabditis elegans] ref|NP_497493.1| M01E10.3 [Caenorhabditis elegans] 1.0E-81
blast AAC68805 Hypothetical protein M01E10.3 [Caenorhabditis elegans] ref|NP_497493.1| M01E10.3 [Caenorhabditis elegans] 1.0E-68
blast AAF60508 Hypothetical protein Y39A3A.2 [Caenorhabditis elegans] ref|NP_497495.1| Y39A3A.2 [Caenorhabditis elegans] 3.0E-38
blast AAF60508 Hypothetical protein Y39A3A.2 [Caenorhabditis elegans] ref|NP_497495.1| Y39A3A.2 [Caenorhabditis elegans] 2.0E-37
blast CAA16375 Hypothetical protein Y44A6B.3 [Caenorhabditis elegans] ref|NP_507987.1| Y44A6B.3 [Caenorhabditis elegans] 7.0E-17
Sequence
Target Sequence 
>C. ELEGANS:184337_AT
gctgccgcagttttccatatggaaatattacaattgaacgatttgagcagtcgtctgaat
ccattagccactaagaatgtagtattgcatgtttgccttggagttcgctactttcctaat
agtgcttgtaaatcctataaagatgctcaagcattgtgcaaggacggtgatgggatgagc
ttgactggaccagcacagtcaatggagaaagcatttttcaaagaatcagttcctaaagtg
gataaatgtgttatatttcttgacggacttgcactcaatcacgatgaaccatacaacttt
gagtttgaagatgaaactcatgacggaacgaaaaactacagattcaatagcgaagatcca
aatagccagactgctccgaattacatag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGCCGCAGTTTTCCATATGGAAA 632 297 16 Antisense
TCGTCTGAATCCATTAGCCACTAAG 457 603 66 Antisense
GTTCGCTACTTTCCTAATAGTGCTT 77 443 118 Antisense
GATGCTCAAGCATTGTGCAAGGACG 608 413 157 Antisense
GTGCAAGGACGGTGATGGGATGAGC 453 479 171 Antisense
GGATGAGCTTGACTGGACCAGCACA 602 513 188 Antisense
GTGTTATATTTCTTGACGGACTTGC 307 485 263 Antisense
ACGGACTTGCACTCAATCACGATGA 92 97 278 Antisense
ATCACGATGAACCATACAACTTTGA 259 29 293 Antisense
GCGAAGATCCAAATAGCCAGACTGC 446 289 365 Antisense
AGCCAGACTGCTCCGAATTACATAG 184 85 379 Antisense
Sequence Source Affymetrix Proprietary Database