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[184336_s_at]

Description Y11D7A.12 /REP_DB=WormBase Gene ID /WP=CE20195 /TR=Q9XWR1 /GB=CAA21587.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 87      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 93      6grp_total > 77      4grp_total > 04      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 204.3
(-0.9)
P 		184.7
(-2)
P 		166.4
(-3)
P 		276.8
(3)
P 		110
B 176.9
(-1.7)
P 		190.4
(-1.1)
P 		150.9
(-3)
P 		273.4
(3)
P 		123
C 184.2
(-0.6)
P 		131.7
(-3)
P 		170
(-1.2)
P 		261.5
(3)
P 		130
avr 188.5
(-1.6) 		168.9
(-2.6) 		162.4
(-3) 		270.6
(3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1017
1 2 3 4 5 6 range
A 183.8
(-3)
P 		233.6
(-2.7)
P 		186.2
(-3)
P 		289.8
(-2.4)
P 		430.2
(-1.5)
P 		1200.3
(3)
P 		1017
B 195
(-3)
P 		189.7
(-3)
P 		245.1
(-2.5)
P 		294.4
(-2.1)
P 		420.4
(-0.9)
P 		861.3
(3)
P 		672
C 198.9
(-2.9)
P 		186.8
(-3)
P 		229.4
(-2.7)
P 		223.7
(-2.7)
P 		558.9
(-0.2)
P 		983.9
(3)
P 		797
avr 192.6
(-3) 		203.4
(-2.9) 		220.2
(-2.8) 		269.3
(-2.4) 		469.8
(-1) 		1015.2
(3) 		823
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 74.4
(3)
P 		40.1
(-3)
P 		43.5
(-2.4)
P 		40.5
(-2.9)
P 		34
B 56.4
(2.5)
P 		47
(0.1)
P 		35
(-3)
P 		58.3
(3)
P 		23
C 61
(3)
P 		37.9
(-3)
P 		59.2
(2.5)
P 		44.1
(-1.4)
P 		23
avr 63.9
(3) 		41.7
(-3) 		45.9
(-1.9) 		47.6
(-1.4) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 296
1 2 3 4 5 6 range
A 33.9
(-3)
P 		83.1
(-1.9)
P 		40.5
(-2.8)
P 		73.5
(-2.1)
P 		129.8
(-0.8)
P 		292.2
(3)
P 		258
B 67.8
(-2.8)
P 		63.1
(-2.9)
P 		59.5
(-3)
P 		78
(-2.6)
P 		170.8
(-0.4)
P 		321.2
(3)
P 		262
C 73.7
(-2.4)
P 		57
(-2.7)
P 		58.4
(-2.7)
P 		45
(-3)
P 		180.9
(-0.1)
P 		329.4
(3)
P 		284
avr 58.5
(-2.9) 		67.7
(-2.7) 		52.8
(-3) 		65.5
(-2.7) 		160.5
(-0.5) 		314.3
(3) 		262
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184336_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9360
Sequence Type Exemplar sequence
Representative Public ID Y11D7A.12 NCBI
Target Description Y11D7A.12 /REP_DB=WormBase Gene ID /WP=CE20195 /TR=Q9XWR1 /GB=CAA21587.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069217(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069217 NCBI Caenorhabditis elegans Y11D7A.12 (Y11D7A.12) mRNA, complete cds. 11/11 None
SNAP00000011210 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9262079:9263678:-1 11/11 None
GENEFINDER00000011227 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9262079:9263678:-1 11/11 None
Y11D7A.12 ENSEMBL cdna:known chromosome:CEL140:IV:9261787:9264240:-1 gene:Y11D7A.12 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9262084-9263684(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y11D7A.12
Entrez Gene 177749 Entrez gene
SwissProt Q9XWR1 EMBL-EBI
WormBase CE35915 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21587 Hypothetical protein Y11D7A.12 [Caenorhabditis elegans] ref|NP_501618.2| Y11D7A.12 [Caenorhabditis elegans] 0.0
blast CAE69051 Hypothetical protein CBG15060 [Caenorhabditis briggsae] 1.0E-111
blast CAE71310 Hypothetical protein CBG18201 [Caenorhabditis briggsae] 9.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR007588 EMBL-EBI FLYWCH Zn-finger 5.8E-7
Pfam IPR007588 EMBL-EBI FLYWCH Zn-finger 5.8E-7
Sequence
Target Sequence 
>C. ELEGANS:184336_S_AT
cattcaatgctccttgcgcagatgccatttttaaataatattaaaacggagatgtcaaat
atggtgaaaaacgaacaattcactcctgaaagatacacacagcatatgtctccaaacttg
ccattgcagaccgccacaattgctccactaataattccaacagagaactacgactcacct
tcatatagacaaccagcaatcaaaagaaaagctactgatttgacgaatgaagaacatgat
ttgagaagagatccgatgttccagccaactttcgagcttgccagaaaattgagaaaactg
tggaaaggagaaccgaacagatatccaagaactactacgactccgactcatcattttgaa
ttcttcctttctaaaaatgatggaacagatgagcatctctatgttccaatgagaatcaat
ctccgtgatgaagcacacttaaaagaggcacttcaagacttctgtggtcaacaatgtatc
ggaatgcttcttttcggaatttcaccaaagatcagtgtaatgttcaatcaacccatgttg
aataattgggacaataatcaattcttcctgctcgacatttcaaatcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTCAATGCTCCTTGCGCAGATGC 560 215 889 Antisense
ATGTCTCCAAACTTGCCATTGCAGA 305 49 994 Antisense
AGAGAACTACGACTCACCTTCATAT 366 69 1050 Antisense
AGAAGAGATCCGATGTTCCAGCCAA 231 75 1132 Antisense
ATCCAAGAACTACTACGACTCCGAC 705 37 1211 Antisense
ACGACTCCGACTCATCATTTTGAAT 623 91 1225 Antisense
GATGAGCATCTCTATGTTCCAATGA 679 411 1276 Antisense
GAGGCACTTCAAGACTTCTGTGGTC 642 403 1333 Antisense
GAATGCTTCTTTTCGGAATTTCACC 196 329 1370 Antisense
CAATAATCAATTCTTCCTGCTCGAC 375 181 1440 Antisense
CTTCCTGCTCGACATTTCAAATCCA 681 217 1452 Antisense
Sequence Source Affymetrix Proprietary Database