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[184335_at]

Description M01E10.2 /REP_DB=WormBase Gene ID /WP=CE19534 /TR=Q9TXR6 /GB=AAC68807.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 54      6grp_total > 82      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 24
(-3)
A 		87.1
(1.7)
P 		105
(3)
P 		23.6
(-3)
A 		81
B 15.3
(-3)
A 		163.4
(3)
P 		113.9
(1)
P 		66.3
(-0.9)
P 		148
C 65.8
(-3)
P 		77.9
(-1.8)
P 		128.4
(3)
P 		66.3
(-3)
A 		63
avr 35
(-3) 		109.5
(2.5) 		115.8
(3) 		52.1
(-1.7) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 65.1
(-0.1)
A 		50.9
(-0.9)
P 		17
(-3)
A 		114.9
(3)
M 		76.3
(0.6)
P 		64
(-0.1)
A 		98
B 20.5
(-3)
A 		95
(1.1)
P 		129.8
(3)
P 		91.8
(0.9)
P 		101.2
(1.4)
P 		57.5
(-1)
A 		109
C 38.8
(-3)
A 		107.7
(3)
P 		43.1
(-2.6)
A 		53.9
(-1.7)
A 		57.7
(-1.4)
P 		69.9
(-0.3)
P 		69
avr 41.5
(-3) 		84.5
(2.7) 		63.3
(-0.1) 		86.9
(3) 		78.4
(1.9) 		63.8
(-0.1) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 8.7
(-1.7)
A 		18.9
(0.9)
P 		27.5
(3)
P 		3.5
(-3)
A 		24
B 4.9
(-3)
A 		40.3
(3)
P 		26.4
(0.6)
P 		14.1
(-1.4)
P 		35
C 21.8
(-1.1)
P 		22.4
(-1)
P 		44.7
(3)
P 		11.2
(-3)
A 		34
avr 11.8
(-2.4) 		27.2
(1.5) 		32.9
(3) 		9.6
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 12
(-1)
A 		18.1
(0.4)
P 		3.7
(-3)
A 		29.1
(3)
M 		23
(1.6)
P 		15.6
(-0.2)
A 		25
B 7.1
(-3)
A 		31.6
(1.3)
P 		31.5
(1.3)
P 		24.3
(0)
P 		41.1
(3)
P 		21.4
(-0.5)
A 		34
C 14.4
(-2)
A 		32.9
(3)
P 		11
(-2.9)
A 		10.8
(-3)
A 		18.7
(-0.9)
P 		23.4
(0.4)
P 		22
avr 11.2
(-3) 		27.5
(3) 		15.4
(-1.5) 		21.4
(0.7) 		27.6
(3) 		20.1
(0.3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184335_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8213
Sequence Type Exemplar sequence
Representative Public ID M01E10.2 NCBI
Target Description M01E10.2 /REP_DB=WormBase Gene ID /WP=CE19534 /TR=Q9TXR6 /GB=AAC68807.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065091(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065091 NCBI Caenorhabditis elegans M01E10.2 (M01E10.2) mRNA, complete cds. 11/11 None
GENEFINDER00000043031 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2035024:2047985:-1 11/11 None
M01E10.2 ENSEMBL cdna:known chromosome:CEL140:III:2035024:2046989:-1 gene:M01E10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2035023-2046989(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01E10.2
Entrez Gene 175342 Entrez gene
SwissProt Q9TXR6 EMBL-EBI
WormBase CE19534 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68807 Hypothetical protein M01E10.2 [Caenorhabditis elegans] ref|NP_497492.1| M01E10.2 [Caenorhabditis elegans] 0.0
blast CAE69096 Hypothetical protein CBG15118 [Caenorhabditis briggsae] 0.0
blast CAA97806 Hypothetical protein M142.2 [Caenorhabditis elegans] ref|NP_499400.2| M142.2 [Caenorhabditis elegans] 5.0E-37
blast CAA97806 Hypothetical protein M142.2 [Caenorhabditis elegans] ref|NP_499400.2| M142.2 [Caenorhabditis elegans] 6.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 2.9E-46
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 1.9E-17
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 2.9E-46
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 1.9E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497492.1 1 1211-1230
M01E10.2 1 1211-1230
GENEFINDER00000043031 2 7-29,1370-1389
Sequence
Target Sequence 
>C. ELEGANS:184335_AT
gagcggaaatttgcgttcgtcgatccacgtggatgctcatcagatttggctctgctcacc
gatttgacctacgcagatgattcgctgactgcgtgggcggcaagccacgtgtttaatgtg
catgacgctgaatctctaaaattcgtctgcaaactctccttatgtacacgagacggtgat
gggtgtgaaggggttacgcccccagcttgtggaaatactaataaaaccggattattgctc
acaaaacgtctcgcaaagggaataaattcagttgatgaagctctgacgtcagcactgtct
accaacgtgaagctcacctcgggctcctctgacggcctggaagacctcttaaaatcggcg
acctccagctatttattctgggtggtcgccttggtggccgtggccgcgattgtcgcaatt
tcaattctttctcgcaacatggctgagaactctgatacggcgacgacttgctcggacccc
acaacgatgtcagagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCGGAAATTTGCGTTCGTCGATC 626 379 3274 Antisense
GCTCATCAGATTTGGCTCTGCTCAC 385 301 3308 Antisense
CTGCTCACCGATTTGACCTACGCAG 393 237 3325 Antisense
AAAATTCGTCTGCAAACTCTCCTTA 663 133 3411 Antisense
ACGCCCCCAGCTTGTGGAAATACTA 131 91 3469 Antisense
GTCAGCACTGTCTACCAACGTGAAG 439 465 3561 Antisense
GAAGACCTCTTAAAATCGGCGACCT 118 339 3613 Antisense
GGCGACCTCCAGCTATTTATTCTGG 374 537 3630 Antisense
ATTTCAATTCTTTCTCGCAACATGG 58 17 3691 Antisense
GAACTCTGATACGGCGACGACTTGC 161 349 3720 Antisense
CGGACCCCACAACGATGTCAGAGTC 129 243 3746 Antisense
Sequence Source Affymetrix Proprietary Database