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[184334_at]

Description F56F11.2 /REP_DB=WormBase Gene ID /WP=CE11278 /TR=Q9TZ63 /GB=AAK21406.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      4grp_high_8_8 > 56      6grp_highest_nonorm > 71      6grp_total > 62      4grp_total > 63      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 349.3
(3)
P 		245.3
(-2.5)
P 		313.9
(1.1)
P 		236.5
(-3)
P 		113
B 294
(3)
P 		268.8
(-0.5)
P 		250.3
(-3)
P 		268.9
(-0.4)
P 		44
C 290.4
(3)
P 		197.4
(-3)
P 		286
(2.7)
P 		285.1
(2.7)
M 		93
avr 311.2
(3) 		237.2
(-3) 		283.4
(0.7) 		263.5
(-0.9) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 208.1
(-3)
P 		303.4
(0.4)
P 		375.4
(3)
P 		278.4
(-0.5)
P 		320.1
(1)
P 		255.1
(-1.3)
P 		167
B 295.1
(-0.4)
P 		288.6
(-0.8)
P 		347
(3)
P 		307
(0.4)
P 		267.6
(-2.2)
P 		255.2
(-3)
P 		92
C 280.9
(-0.6)
P 		367.9
(2.1)
P 		334.1
(1.1)
P 		395.2
(3)
P 		205.7
(-3)
P 		230
(-2.2)
P 		190
avr 261.4
(-2.2) 		320
(1.2) 		352.2
(3) 		326.9
(1.6) 		264.5
(-2) 		246.8
(-3) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 127.2
(3)
P 		53.2
(-1.8)
P 		82.1
(0.1)
P 		34.6
(-3)
P 		93
B 93.8
(3)
P 		66.4
(-1.5)
P 		58
(-2.9)
P 		57.3
(-3)
P 		37
C 96.1
(2.6)
P 		56.7
(-2)
P 		99.7
(3)
P 		48.1
(-3)
M 		52
avr 105.7
(3) 		58.8
(-1.8) 		79.9
(0.4) 		46.7
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 38.4
(-3)
P 		107.9
(3)
P 		81.7
(0.7)
P 		70.6
(-0.2)
P 		96.6
(2)
P 		62.1
(-1)
P 		70
B 102.7
(1.7)
P 		96.1
(0.2)
P 		84.3
(-2.3)
P 		81.3
(-3)
P 		108.7
(3)
P 		95.2
(0)
P 		27
C 104.1
(1.9)
P 		112.2
(3)
P 		85
(-0.6)
P 		79.5
(-1.3)
P 		66.6
(-3)
P 		77
(-1.6)
P 		46
avr 81.7
(-2) 		105.4
(3) 		83.7
(-1.6) 		77.1
(-3) 		90.6
(-0.1) 		78.1
(-2.8) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184334_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6245
Sequence Type Exemplar sequence
Representative Public ID F56F11.2 NCBI
Target Description F56F11.2 /REP_DB=WormBase Gene ID /WP=CE11278 /TR=Q9TZ63 /GB=AAK21406.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065232(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065232 NCBI Caenorhabditis elegans F56F11.2 (F56F11.2) mRNA, complete cds. 11/11 None
GENEFINDER00000006316 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2882294:2884957:1 11/11 None
F56F11.2 ENSEMBL cdna:known chromosome:CEL140:III:2882294:2884957:1 gene:F56F11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006305 5/11 Cross Hyb Matching Probes None
SNAP00000006306 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2882293-2884957(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56F11.2
Entrez Gene 186407 Entrez gene
SwissProt Q9TZ63 EMBL-EBI
WormBase CE11278 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21406 Hypothetical protein F56F11.2 [Caenorhabditis elegans] ref|NP_497633.1| F56F11.2 [Caenorhabditis elegans] 0.0
blast CAE57503 Hypothetical protein CBG00477 [Caenorhabditis briggsae] 2.0E-97
Sequence
Target Sequence 
>C. ELEGANS:184334_AT
cccgaactatgctggtgtacaccgaagaacgaaaacgctgggtggaataccatattcctg
tcgaacaatccctccaggacattttcggatcggatgggtttcctgtggaggaaatacgtg
gcatccgagagacttttggaactcacggacatcgtatgggtgcactgcaaactcggttga
cgtttcatgatttgaatgatgtattggtggcgagatgtttgcatttacattggaatacga
cagctactgtcgagtttgaccatgtcaatcgagaaattcaggttcggttgcttgccaagt
tcccattagacgacgaggtgacccgtatgttttaccttattgcatcaaaggaacatcacg
tgtttctaggggtttatgatactgcaattgttcatattaagagtccaaaactagaagaaa
tcgttgggtggagaatgcaaaaaatgcttatgagagatggccataaagatgaagttttac
aaatttcaaattaccgtcaacttcttgcacttgcgctgacaaaatatgctgacaaagatg
aagatttggctgaaaatttgaagaatttgggtatcgagccgccgagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCGAACTATGCTGGTGTACACCGA 547 259 596 Antisense
ACCATATTCCTGTCGAACAATCCCT 66 85 644 Antisense
AACAATCCCTCCAGGACATTTTCGG 123 135 659 Antisense
GACTTTTGGAACTCACGGACATCGT 156 371 726 Antisense
GACATCGTATGGGTGCACTGCAAAC 223 369 743 Antisense
GACAGCTACTGTCGAGTTTGACCAT 97 369 834 Antisense
AATTCAGGTTCGGTTGCTTGCCAAG 255 177 870 Antisense
TGCTTGCCAAGTTCCCATTAGACGA 22 579 884 Antisense
GTGACCCGTATGTTTTACCTTATTG 160 481 913 Antisense
AAATTACCGTCAACTTCTTGCACTT 386 89 1083 Antisense
AATTTGGGTATCGAGCCGCCGAGAA 703 173 1159 Antisense
Sequence Source Affymetrix Proprietary Database