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[184332_at]

Description Y17G9B.7 /REP_DB=WormBase Gene ID /WP=CE24186 /TR=Q9N577 /GB=AAF60448.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 0      4grp_high_8_8 > 22      6grp_total > 08      4grp_total > 27      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 46.3
(-3)
P 		86.9
(1.8)
P 		97.3
(3)
P 		73.6
(0.2)
P 		51
B 86.1
(3)
P 		51.8
(-1.2)
P 		37.6
(-3)
P 		46.6
(-1.9)
A 		49
C 59.3
(-1.7)
P 		69.5
(-0.2)
P 		50
(-3)
A 		91.4
(3)
P 		41
avr 63.9
(-1.4) 		69.4
(2.3) 		61.6
(-3) 		70.5
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 84.2
(3)
P 		43.3
(-2.6)
P 		54.2
(-1.1)
P 		65.9
(0.5)
A 		67.9
(0.8)
P 		40.6
(-3)
P 		44
B 87.2
(2.5)
P 		47.4
(-1.9)
P 		81
(1.8)
P 		92
(3)
P 		37.1
(-3)
A 		71.9
(0.8)
P 		55
C 69.6
(-0.2)
P 		91.6
(3)
P 		55.9
(-2.3)
P 		53
(-2.7)
P 		55.3
(-2.4)
P 		50.9
(-3)
P 		41
avr 80.3
(3) 		60.8
(-1.3) 		63.7
(-0.7) 		70.3
(0.8) 		53.4
(-3) 		54.5
(-2.8) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 16.9
(-0.5)
P 		18.9
(0.3)
P 		25.4
(3)
P 		10.8
(-3)
P 		15
B 27.5
(3)
P 		12.8
(-1.7)
P 		8.7
(-3)
P 		9.9
(-2.6)
A 		19
C 19.6
(2.5)
P 		20
(3)
P 		17.4
(-0.4)
A 		15.4
(-3)
P 		5
avr 21.3
(3) 		17.2
(0.4) 		17.2
(0.4) 		12
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 15.5
(0.2)
P 		15.4
(0.1)
P 		11.8
(-1.9)
P 		16.7
(0.8)
A 		20.5
(3)
P 		9.9
(-3)
P 		11
B 30.3
(3)
P 		15.8
(-2.7)
P 		19.7
(-1.2)
P 		24.4
(0.7)
P 		15.1
(-3)
A 		26.8
(1.6)
P 		15
C 25.8
(2.3)
P 		27.9
(3)
P 		14.2
(-1.8)
P 		10.6
(-3)
P 		17.9
(-0.5)
P 		17
(-0.8)
P 		17
avr 23.9
(3) 		19.7
(0.1) 		15.2
(-3) 		17.2
(-1.6) 		17.8
(-1.2) 		17.9
(-1.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184332_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10884
Sequence Type Exemplar sequence
Representative Public ID Y17G9B.7 NCBI
Target Description Y17G9B.7 /REP_DB=WormBase Gene ID /WP=CE24186 /TR=Q9N577 /GB=AAF60448.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068233(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068233 NCBI Caenorhabditis elegans Y17G9B.7 (Y17G9B.7) mRNA, complete cds. 11/11 None
SNAP00000043796 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4753635:4755423:-1 10/11 None
Y17G9B.7 ENSEMBL cdna:known chromosome:CEL140:IV:4754866:4756127:-1 gene:Y17G9B.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4754871-4756133(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y17G9B.7
Entrez Gene 189469 Entrez gene
SwissProt Q9N577 EMBL-EBI
WormBase CE24186 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500634 Y17G9B.7 [Caenorhabditis elegans] gb|AAF60448.1| Hypothetical protein Y17G9B.7 [Caenorhabditis elegans] 0.0
blast NP_500634 Y17G9B.7 [Caenorhabditis elegans] gb|AAF60448.1| Hypothetical protein Y17G9B.7 [Caenorhabditis elegans] 4.0E-92
blast AAB92036 Hypothetical protein E04A4.1 [Caenorhabditis elegans] ref|NP_500625.2| E04A4.1 [Caenorhabditis elegans] 1.0E-55
blast AAO91704 Hypothetical protein R08C7.13 [Caenorhabditis elegans] ref|NP_001023331.1| R08C7.13 [Caenorhabditis elegans] 3.0E-30
blast AAB92036 Hypothetical protein E04A4.1 [Caenorhabditis elegans] ref|NP_500625.2| E04A4.1 [Caenorhabditis elegans] 4.0E-29
blast AAB92037 Hypothetical protein E04A4.2 [Caenorhabditis elegans] ref|NP_500624.1| E04A4.2 [Caenorhabditis elegans] 1.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.8E-4
Sequence
Target Sequence 
>C. ELEGANS:184332_AT
agtacagctgaccctgaatgttctaatgaactcaaaggaatggagtttgggtggttgtcc
atgatgtccatgacatcggacaacaatagttcacaagatgaagatgcattgagacagttt
tccggcaaaactgattcaatttgtttaaatagaaacccattctcaatagaaccatctaaa
caaatgcaaatgattttaacacgaaacatgaacgtagtatcaacgaaatgtgatcttaat
gatgtgtttgttacaaatgcccgttcattcaccgcttttctgaaaatcgaagatgtcaat
atatttctgaagcactggatgcacagatccgacagaaaactgaaatctgcatggttcgat
ttagatgcattcaggtgggacgttgaagatgttctcgaaccactttttaaaggtatagca
tatcacgttgccccagcagatagagaatttattgttcatttgccgaaaaagttatcggga
tgtggtgattatcgtgtcataggtggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTACAGCTGACCCTGAATGTTCTA 586 61 409 Antisense
TTTGGGTGGTTGTCCATGATGTCCA 658 665 454 Antisense
ATGCATTGAGACAGTTTTCCGGCAA 403 43 512 Antisense
TGTTACAAATGCCCGTTCATTCACC 3 563 657 Antisense
TTCATTCACCGCTTTTCTGAAAATC 193 689 672 Antisense
GAAGCACTGGATGCACAGATCCGAC 347 341 717 Antisense
TTAGATGCATTCAGGTGGGACGTTG 702 679 769 Antisense
GATGTTCTCGAACCACTTTTTAAAG 621 409 796 Antisense
AGGTATAGCATATCACGTTGCCCCA 621 57 819 Antisense
ATCACGTTGCCCCAGCAGATAGAGA 36 29 830 Antisense
GGTGATTATCGTGTCATAGGTGGTT 628 499 892 Antisense
Sequence Source Affymetrix Proprietary Database