[Home] | [Total List]

[184331_at]

Description F54D11.2 /REP_DB=WormBase Gene ID /WP=CE11070 /TR=Q22992 /GB=AAB04823.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 90      6grp_total > 27      4grp_total > 46      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 277.6
(3)
P 		235.3
(0.2)
P 		197.2
(-2.4)
P 		187.8
(-3)
P 		90
B 261.2
(3)
P 		192
(-2.6)
P 		202
(-1.8)
P 		186.6
(-3)
P 		75
C 212
(2)
P 		193.4
(-0.2)
P 		169.1
(-3)
P 		221
(3)
P 		52
avr 250.3
(3) 		206.9
(-1.3) 		189.4
(-3) 		198.5
(-2.1) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 256.4
(3)
P 		188.1
(0.2)
P 		169.1
(-0.6)
P 		109.9
(-3)
P 		116
(-2.8)
P 		174
(-0.4)
P 		147
B 239.9
(3)
P 		183.2
(0.7)
P 		110.3
(-2.2)
P 		122.8
(-1.7)
P 		89
(-3)
P 		167.4
(0.1)
P 		151
C 237.1
(3)
P 		174.2
(0.1)
P 		152.4
(-1)
P 		108.6
(-3)
P 		111.2
(-2.9)
P 		134.5
(-1.8)
P 		129
avr 244.5
(3) 		181.8
(0.3) 		143.9
(-1.3) 		113.8
(-2.6) 		105.4
(-3) 		158.6
(-0.7) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 101.1
(3)
P 		51.1
(-1.1)
P 		51.5
(-1)
P 		27.5
(-3)
P 		74
B 83.3
(3)
P 		47.4
(-2)
P 		46.8
(-2)
P 		39.8
(-3)
P 		44
C 70.2
(3)
P 		55.6
(0.3)
P 		58.9
(0.9)
P 		37.3
(-3)
P 		33
avr 84.9
(3) 		51.4
(-1) 		52.4
(-0.9) 		34.9
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 47.3
(-0)
P 		66.9
(3)
P 		36.8
(-1.6)
P 		27.9
(-3)
P 		35
(-1.9)
P 		42.4
(-0.8)
P 		39
B 83.5
(3)
P 		61
(0.6)
P 		26.8
(-3)
P 		32.5
(-2.4)
P 		36.2
(-2)
P 		62.4
(0.8)
P 		57
C 87.9
(3)
P 		53.1
(-0.2)
P 		38.8
(-1.5)
P 		21.8
(-3)
P 		36
(-1.7)
P 		45
(-0.9)
P 		66
avr 72.9
(3) 		60.3
(1.3) 		34.1
(-2.1) 		27.4
(-3) 		35.7
(-1.9) 		49.9
(-0) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184331_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15000
Sequence Type Exemplar sequence
Representative Public ID F54D11.2 NCBI
Target Description F54D11.2 /REP_DB=WormBase Gene ID /WP=CE11070 /TR=Q22992 /GB=AAB04823.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071846(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071846 NCBI Caenorhabditis elegans F54D11.2 (F54D11.2) mRNA, complete cds. 11/11 None
SNAP00000035032 ENSEMBL cdna:SNAP chromosome:CEL140:V:4617761:4632815:1 11/11 None
GENEFINDER00000035035 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4618690:4635005:1 11/11 None
F54D11.2.3 ENSEMBL cdna:known chromosome:CEL140:V:4617761:4730609:1 gene:F54D11.2 11/11 A 
F54D11.2.2 ENSEMBL cdna:known chromosome:CEL140:V:4617761:4628271:1 gene:F54D11.2 11/11 A 
F54D11.2.1 ENSEMBL cdna:known chromosome:CEL140:V:4617761:4628324:1 gene:F54D11.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4617760-4627394(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54D11.2
Entrez Gene 178853 Entrez gene
SwissProt Q22992 EMBL-EBI
WormBase CE30805 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04823 Hypothetical protein F54D11.2 [Caenorhabditis elegans] ref|NP_504247.2| F54D11.2 [Caenorhabditis elegans] 0.0
blast CAE64155 Hypothetical protein CBG08774 [Caenorhabditis briggsae] 0.0
blast AAB04824 Hypothetical protein F54D11.1 [Caenorhabditis elegans] ref|NP_504248.1| F54D11.1 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:184331_AT
gataaagccctgtcaggccttgcatttgccagtagcacacattcagcttcatcctcggct
gctccatcgccagttggagcatccggaagaagagcaaccgtgactggagccggtagtgag
gatattgcgaagagaagaaaagaatccatcatattatcgcaacaaatagctgctccttcc
atctctggtcctcctccacctgcaccatctccgagaactgaagatcgtttcctggcattc
caaaatctcgttgcttcaactatcacaactggagatgatatgcccagaagagcatctatg
ggagccagtccaagagtcattgaacgtggagatttccgtgatcatcgtccaccaccgccg
ccgccgctgccgattctccagaatccagtagctactccaatgtcacagcagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAAAGCCCTGTCAGGCCTTGCAT 672 421 3136 Antisense
GGCCTTGCATTTGCCAGTAGCACAC 560 543 3151 Antisense
AGTAGCACACATTCAGCTTCATCCT 335 63 3166 Antisense
TCCATCGCCAGTTGGAGCATCCGGA 411 589 3198 Antisense
AGAAGAGCAACCGTGACTGGAGCCG 242 75 3223 Antisense
CAACAAATAGCTGCTCCTTCCATCT 345 189 3295 Antisense
TGAAGATCGTTTCCTGGCATTCCAA 318 575 3354 Antisense
GGCATTCCAAAATCTCGTTGCTTCA 430 537 3369 Antisense
GTGGAGATTTCCGTGATCATCGTCC 190 491 3461 Antisense
TTCTCCAGAATCCAGTAGCTACTCC 100 689 3509 Antisense
TAGCTACTCCAATGTCACAGCAGCC 444 651 3524 Antisense
Sequence Source Affymetrix Proprietary Database