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[184330_at]

Description C56C10.1 /REP_DB=WormBase Gene ID /WP=CE27890 /TR=Q18891 /GB=AAA68769.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 95      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 93      6grp_total > 86      4grp_total > 31      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 271.7
(0.9)
P 		210
(-3)
P 		224.5
(-2.1)
P 		305.4
(3)
P 		95
B 272.7
(3)
P 		205.1
(-2.9)
P 		211
(-2.4)
P 		203.7
(-3)
P 		69
C 290.8
(3)
P 		175.9
(-3)
P 		227.8
(-0.3)
P 		205.1
(-1.5)
P 		115
avr 278.4
(3) 		197
(-3) 		221.1
(-1.2) 		238.1
(0) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 363
1 2 3 4 5 6 range
A 259.3
(-3)
P 		331.5
(-1.6)
P 		303.6
(-2.2)
P 		521.2
(1.9)
P 		376.2
(-0.8)
P 		579.1
(3)
P 		320
B 262.6
(-2.8)
P 		250.7
(-3)
P 		311.8
(-1.9)
P 		340.5
(-1.3)
P 		440.7
(0.5)
P 		574
(3)
P 		323
C 216.5
(-3)
P 		258.3
(-2.3)
P 		376.2
(-0.3)
P 		458.4
(1.1)
P 		378.1
(-0.3)
P 		569.5
(3)
P 		353
avr 246.1
(-3) 		280.2
(-2.4) 		330.5
(-1.5) 		440
(0.5) 		398.3
(-0.2) 		574.2
(3) 		328
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 98.9
(3)
P 		45.6
(-2.9)
P 		58.7
(-1.5)
P 		44.7
(-3)
P 		54
B 87
(3)
P 		50.6
(-2)
P 		48.9
(-2.2)
P 		43.4
(-3)
P 		44
C 96.3
(3)
P 		50.6
(-1.4)
P 		79.4
(1.4)
P 		34.6
(-3)
P 		62
avr 94.1
(3) 		48.9
(-2.1) 		62.3
(-0.6) 		40.9
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 47.8
(-3)
P 		117.9
(1.5)
P 		66.1
(-1.8)
P 		132.2
(2.4)
P 		113.5
(1.2)
P 		141
(3)
P 		93
B 91.4
(-2.3)
P 		83.4
(-2.7)
P 		75.7
(-3)
P 		90.2
(-2.4)
P 		179.1
(1.5)
P 		214
(3)
P 		138
C 80.2
(-2.9)
P 		78.8
(-3)
P 		95.7
(-2.1)
P 		92.2
(-2.3)
P 		122.4
(-0.7)
P 		190.6
(3)
P 		112
avr 73.1
(-3) 		93.4
(-1.9) 		79.2
(-2.7) 		104.9
(-1.2) 		138.3
(0.6) 		181.9
(3) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184330_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5674
Sequence Type Exemplar sequence
Representative Public ID C56C10.1 NCBI
Target Description C56C10.1 /REP_DB=WormBase Gene ID /WP=CE27890 /TR=Q18891 /GB=AAA68769.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062941(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062941 NCBI Caenorhabditis elegans C56C10.1 (C56C10.1) mRNA, complete cds. 11/11 A 
SNAP00000022070 ENSEMBL cdna:SNAP chromosome:CEL140:II:6601269:6603309:1 11/11 None
GENEFINDER00000022083 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6601269:6603324:1 11/11 None
C56C10.1 ENSEMBL cdna:known chromosome:CEL140:II:6601230:6603363:1 gene:C56C10.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6601791-6603321(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C56C10.1
Entrez Gene 174095 Entrez gene
SwissProt Q18891 EMBL-EBI
WormBase CE30636 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605988_AT similar to vacuolar protein sorting 33B (yeast homolog)) cfa
CANINE:1590869_S_AT similar to vacuolar protein sorting 33B (yeast homolog)) cfa
CANINE_2:CFA.19528.1.S1_S_AT similar to vacuolar protein sorting 33B (yeast homolog)) cfa
CANINE_2:CFA.19528.2.S1_AT similar to vacuolar protein sorting 33B (yeast homolog)) cfa
CANINE_2:CFA.20336.1.S1_S_AT similar to vacuolar protein sorting 33B (yeast homolog)) cfa
CANINE_2:CFA.2635.1.A1_AT similar to vacuolar protein sorting 33B (yeast homolog)) cfa
CANINE_2:CFAAFFX.18843.1.S1_AT similar to vacuolar protein sorting 33B (yeast homolog)) cfa
HU35KSUBA:RC_AA463624_AT vacuolar protein sorting 33B (yeast) hs
HU35KSUBA:AA482390_AT vacuolar protein sorting 33B (yeast) hs
HG-U133A:218415_AT vacuolar protein sorting 33B (yeast) hs
HG-U133_PLUS_2:218415_AT vacuolar protein sorting 33B (yeast) hs
HG-U133A_2:218415_AT vacuolar protein sorting 33B (yeast) hs
U133_X3P:G9945311_3P_S_AT vacuolar protein sorting 33B (yeast) hs
U133_X3P:4870633C_3P_AT vacuolar protein sorting 33B (yeast) hs
HG-U133A_2:44111_AT vacuolar protein sorting 33B (yeast) hs
HG-FOCUS:44111_AT vacuolar protein sorting 33B (yeast) hs
HG-U133_PLUS_2:44111_AT vacuolar protein sorting 33B (yeast) hs
HG-U133A:44111_AT vacuolar protein sorting 33B (yeast) hs
HG-U95B:44111_AT vacuolar protein sorting 33B (yeast) hs
MOUSE430A_2:1427933_AT vacuolar protein sorting 33B (yeast) mm
MOE430A:1427933_AT vacuolar protein sorting 33B (yeast) mm
MOUSE430_2:1427933_AT vacuolar protein sorting 33B (yeast) mm
MG-U74CV2:134790_AT vacuolar protein sorting 33B (yeast) mm
RT-U34:U35245_G_AT vacuolar protein sorting 33B (yeast) rn
RG-U34A:U35245_G_AT vacuolar protein sorting 33B (yeast) rn
RT-U34:U35245_AT vacuolar protein sorting 33B (yeast) rn
RG-U34A:U35245_AT vacuolar protein sorting 33B (yeast) rn
RG-U34A:RC_AI059963_AT vacuolar protein sorting 33B (yeast) rn
RG-U34A:RC_AI072341_G_AT vacuolar protein sorting 33B (yeast) rn
RAE230A:1370521_AT vacuolar protein sorting 33B (yeast) rn
RAT230_2:1370521_AT vacuolar protein sorting 33B (yeast) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9306 protein secretion inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8565 protein transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68769 Hypothetical protein C56C10.1 [Caenorhabditis elegans] ref|NP_495342.2| C56C10.1 [Caenorhabditis elegans] 0.0
blast CAE60661 Hypothetical protein CBG04314 [Caenorhabditis briggsae] 1.0E-135
blast CAG31522 hypothetical protein [Gallus gallus] ref|NP_001026519.1| hypothetical protein LOC425858 [Gallus gallus] 1.0E-61
Sequence
Target Sequence 
>C. ELEGANS:184330_AT
gatgatgtcacttgcatctctcaaattagacggagttcctgatgatacgtacaacgaatt
cgtggaaatgtatctacaaaagtacggatacgagcatatgttcgaacttcagaatcttcg
aaattcccgtgttatttacgcccgtcgacatatcgcacacgatcggactatttcggaacg
tgccaggacatgggaaacattggcaagaaagttcagaatcgttaagggaaacgagccaat
ggatatgtcaaatccttctgatatgagttatgttttcggtgcaagaatttctcccctgct
ttgcaaaatcgttgaagatacaatagatcatggatggaatcaagcagaatatgaacgaat
tattggaaaagataaagtattagtcgaagagaatacatatattgcggcagatcgtcgacc
agataatcgtactcgaaaagccatcatggtctttgtcaacggcggaattacctattggga
agtggcagctttacggctgctggcgattcaaaagaacttcagaattctcatctgcacaac
gcatgtcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGATGTCACTTGCATCTCTCAAA 405 411 831 Antisense
GAATCTTCGAAATTCCCGTGTTATT 340 327 942 Antisense
TATTTACGCCCGTCGACATATCGCA 222 661 963 Antisense
TATCGCACACGATCGGACTATTTCG 44 659 981 Antisense
GGACTATTTCGGAACGTGCCAGGAC 439 525 995 Antisense
TTTCGGTGCAAGAATTTCTCCCCTG 425 671 1104 Antisense
TTCTCCCCTGCTTTGCAAAATCGTT 418 693 1119 Antisense
ATATTGCGGCAGATCGTCGACCAGA 314 19 1229 Antisense
AAGCCATCATGGTCTTTGTCAACGG 385 149 1268 Antisense
GTGGCAGCTTTACGGCTGCTGGCGA 358 491 1312 Antisense
TCTCATCTGCACAACGCATGTCATC 588 611 1356 Antisense
Sequence Source Affymetrix Proprietary Database