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[184329_s_at]

Description Y51H4A.20 /REP_DB=WormBase Gene ID /WP=CE22345 /TR=Q9NAD3 /GB=CAB61152.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 26      4grp_highest_8_8 > 54      4grp_high_8_8 > 18      6grp_highest_nonorm > 61      6grp_total > 25      4grp_total > 23      6grp_highest_sub > 01_02      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 587
1 2 3 4 range
A 738.4
(3)
P 		348.3
(-1.3)
P 		190.6
(-3)
P 		651.8
(2.1)
P 		548
B 746.7
(3)
P 		366.8
(-1.5)
P 		236.8
(-3)
P 		744
(3)
P 		510
C 777.4
(3)
P 		327.6
(-2.2)
P 		253.8
(-3)
P 		646
(1.5)
P 		524
avr 754.2
(3) 		347.6
(-1.6) 		227.1
(-3) 		680.6
(2.2) 		527

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 603.5
(3)
P 		510.9
(0.9)
P 		389.5
(-1.9)
P 		388.8
(-1.9)
P 		341.1
(-3)
P 		367.2
(-2.4)
P 		262
B 504.5
(0.6)
P 		586.6
(3)
P 		509.6
(0.7)
P 		383.2
(-3)
P 		406
(-2.3)
P 		462
(-0.7)
P 		203
C 488.2
(2.2)
P 		452.7
(0.7)
P 		412.7
(-1)
P 		506.4
(3)
P 		364.3
(-3)
P 		482.5
(2)
P 		142
avr 532.1
(3) 		516.7
(2.4) 		437.3
(-0.5) 		426.1
(-0.9) 		370.5
(-3) 		437.2
(-0.5) 		162
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 268.9
(3)
P 		75.6
(-2.3)
P 		49.8
(-3)
P 		95.4
(-1.8)
P 		219
B 238.1
(3)
P 		90.6
(-1.8)
P 		54.9
(-3)
P 		158.6
(0.4)
P 		183
C 257.4
(3)
P 		94.2
(-2.8)
P 		88.4
(-3)
P 		108.9
(-2.3)
P 		169
avr 254.8
(3) 		86.8
(-2.3) 		64.4
(-3) 		121
(-1.2) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 111.3
(-1.4)
P 		181.7
(3)
P 		84.8
(-3)
P 		98.6
(-2.1)
P 		102.9
(-1.9)
P 		89.4
(-2.7)
P 		97
B 175.5
(1.7)
P 		195.3
(3)
P 		123.7
(-1.6)
P 		101.5
(-3)
P 		164.9
(1.1)
P 		172.3
(1.5)
P 		94
C 180.9
(3)
P 		138.1
(-0.2)
P 		105
(-2.8)
P 		101.8
(-3)
P 		117.9
(-1.8)
P 		161.5
(1.5)
P 		79
avr 155.9
(1.7) 		171.7
(3) 		104.5
(-2.7) 		100.6
(-3) 		128.6
(-0.6) 		141.1
(0.4) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184329_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9431
Sequence Type Exemplar sequence
Representative Public ID Y51H4A.20 NCBI
Target Description Y51H4A.20 /REP_DB=WormBase Gene ID /WP=CE22345 /TR=Q9NAD3 /GB=CAB61152.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070576(11), NM_070573(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070576 NCBI Caenorhabditis elegans Y51H4A.20 (Y51H4A.20) mRNA, complete cds. 11/11 None
NM_070573 NCBI Caenorhabditis elegans Y51H4A.17 (Y51H4A.17) mRNA, complete cds. 11/11 A 
SNAP00000000191 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16670504:16671218:1 11/11 None
SNAP00000000193 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16682059:16682358:-1 11/11 None
GENEFINDER00000000210 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16681933:16685646:-1 11/11 None
GENEFINDER00000000211 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16664281:16671218:1 11/11 None
Y51H4A.17 ENSEMBL cdna:known chromosome:CEL140:IV:16664279:16671415:1 gene:Y51H4A.17 11/11 A 
Y51H4A.20 ENSEMBL cdna:known chromosome:CEL140:IV:16680769:16682358:-1 gene:Y51H4A.20 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16670509-16670806(+) 73.57 73.57
Public Domain and Genome References
Gene Title

Ensembl Y51H4A.17
Y51H4A.20
Entrez Gene 178465 Entrez gene
190155 Entrez gene
SwissProt Q9NAD6 EMBL-EBI
Q9NAD3 EMBL-EBI
WormBase CE35668 Wormbase
CE22345 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.19520.1.S1_AT similar to Signal transducer and activator of transcription 5A cfa
CANINE_2:CFAAFFX.23632.1.S1_AT similar to Signal transducer and activator of transcription 5A cfa
CANINE_2:CFAAFFX.23632.1.S1_S_AT similar to Signal transducer and activator of transcription 5A cfa
DROSOPHILA_2:1635827_S_AT Signal-transducer and activator of transcription protein at 92E dm
DROSGENOME1:142948_AT Signal-transducer and activator of transcription protein at 92E dm
HG-U133A:203010_AT signal transducer and activator of transcription 5A hs
HG-U133_PLUS_2:203010_AT signal transducer and activator of transcription 5A hs
HG-U133A_2:203010_AT signal transducer and activator of transcription 5A hs
HG-FOCUS:203010_AT signal transducer and activator of transcription 5A hs
HG-U95AV2:506_S_AT signal transducer and activator of transcription 5A hs
HC-G110:506_S_AT signal transducer and activator of transcription 5A hs
HUGENEFL:U43185_S_AT signal transducer and activator of transcription 5A hs
HG-U95AV2:40458_AT signal transducer and activator of transcription 5A hs
HG-U95D:75183_AT signal transducer and activator of transcription 5A hs
MOUSE430A_2:1421469_A_AT signal transducer and activator of transcription 5A mm
MOE430A:1421469_A_AT signal transducer and activator of transcription 5A mm
MOUSE430_2:1421469_A_AT signal transducer and activator of transcription 5A mm
MU11KSUBA:U21103_S_AT signal transducer and activator of transcription 5A mm
MG-U74AV2:100422_I_AT signal transducer and activator of transcription 5A mm
MG-U74AV2:100423_F_AT signal transducer and activator of transcription 5A mm
MOE430A:1450259_A_AT signal transducer and activator of transcription 5A mm
MOUSE430A_2:1450259_A_AT signal transducer and activator of transcription 5A mm
MOUSE430_2:1450259_A_AT signal transducer and activator of transcription 5A mm
MG-U74CV2:140432_R_AT Signal transducer and activator of transcription 5B (Stat5b) mm
MOE430B:1420178_AT Signal transducer and activator of transcription 5B (Stat5b) mm
MOUSE430_2:1420178_AT Signal transducer and activator of transcription 5B (Stat5b) mm
RG-U34A:U24175_AT signal transducer and activator of transcription 5A rn
RG-U34A:U25137_AT signal transducer and activator of transcription 5A rn
RAE230A:1368231_AT signal transducer and activator of transcription 5A rn
RAT230_2:1368231_AT signal transducer and activator of transcription 5A rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
4871 signal transducer activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB61149 Hypothetical protein Y51H4A.17 [Caenorhabditis elegans] ref|NP_502974.2| Y51H4A.17 [Caenorhabditis elegans] 0.0
blast CAE68055 Hypothetical protein CBG13675 [Caenorhabditis briggsae] 0.0
blast CAB61149 Hypothetical protein Y51H4A.17 [Caenorhabditis elegans] ref|NP_502974.2| Y51H4A.17 [Caenorhabditis elegans] 3.0E-81
blast CAB61151 Hypothetical protein Y51H4A.19 [Caenorhabditis elegans] ref|NP_502976.1| Y51H4A.19 [Caenorhabditis elegans] 9.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR001217 EMBL-EBI STAT protein 2.0E-27
Pfam IPR001217 EMBL-EBI STAT protein 1.1E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000000210 1 59-81
Sequence
Target Sequence 
>C. ELEGANS:184329_S_AT
agaaatgctgcgtttcttcgagtccgaggagcgtcatcgcgtgggcggtggtgacagtcc
aactggatatatgcaaagtgaaattgtcatggttgcaaaaacaaatggacgaatgtccaa
tgcaccgtccatgtttggtgcagattctccgtcaccgttgtcggttcaaagcaaattgga
ttggtcacccggggaggttcatcagaatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAATGCTGCGTTTCTTCGAGTCC 23 73 36 Antisense
TCTTCGAGTCCGAGGAGCGTCATCG 206 617 50 Antisense
GGCGGTGGTGACAGTCCAACTGGAT 537 477 79 Antisense
GACGAATGTCCAATGCACCGTCCAT 479 377 143 Antisense
GTCCAATGCACCGTCCATGTTTGGT 512 477 150 Antisense
ATGTTTGGTGCAGATTCTCCGTCAC 340 47 166 Antisense
CTCCGTCACCGTTGTCGGTTCAAAG 195 235 182 Antisense
CACCGTTGTCGGTTCAAAGCAAATT 349 197 188 Antisense
AGCAAATTGGATTGGTCACCCGGGG 633 73 205 Antisense
GATTGGTCACCCGGGGAGGTTCATC 561 413 214 Antisense
ACCCGGGGAGGTTCATCAGAATCAT 173 89 222 Antisense
Sequence Source Affymetrix Proprietary Database