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[184328_s_at]

Description T26C12.3 /REP_DB=WormBase Gene ID /WP=CE18287 /TR=O61858 /GB=AAC17556.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 38      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_total > 37      4grp_total > 62      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 491
1 2 3 4 range
A 777.5
(3)
P 		645.5
(1.3)
P 		723.2
(2.3)
P 		318.8
(-3)
P 		459
B 809.6
(3)
P 		553.1
(-1.7)
P 		700.4
(1)
P 		484.6
(-3)
P 		325
C 803
(3)
P 		467.9
(-2.9)
P 		743.1
(2)
P 		459.6
(-3)
P 		343
avr 796.7
(3) 		555.5
(-0.9) 		722.2
(1.8) 		421
(-3) 		376

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 420
1 2 3 4 5 6 range
A 513
(3)
P 		268
(-0.5)
P 		100.6
(-2.9)
P 		125
(-2.6)
P 		96
(-3)
P 		280.3
(-0.3)
P 		417
B 492.6
(3)
P 		281
(-0.3)
P 		140.8
(-2.4)
P 		102.8
(-3)
P 		123.5
(-2.7)
P 		309.1
(0.2)
P 		390
C 428.5
(3)
P 		282.2
(0.4)
P 		95.5
(-3)
M 		132.4
(-2.3)
A 		93.4
(-3)
P 		318.5
(1)
P 		335
avr 478
(3) 		277.1
(-0.2) 		112.3
(-2.9) 		120.1
(-2.7) 		104.3
(-3) 		302.6
(0.2) 		374
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 283.1
(3)
P 		140.1
(-0.6)
P 		189.1
(0.6)
P 		46.7
(-3)
P 		236
B 258.2
(3)
P 		136.6
(-1.7)
P 		162.3
(-0.7)
P 		103.3
(-3)
P 		155
C 265.8
(3)
P 		134.5
(-1.2)
P 		259
(2.8)
P 		77.5
(-3)
P 		188
avr 269
(3) 		137.1
(-1.1) 		203.5
(1) 		75.8
(-3) 		193

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 94.6
(2.9)
P 		95.3
(3)
P 		21.9
(-3)
P 		31.7
(-2.2)
P 		29
(-2.4)
P 		68.2
(0.8)
P 		73
B 171.4
(3)
P 		93.5
(-0.2)
P 		34.2
(-2.7)
P 		27.2
(-3)
P 		50.2
(-2)
P 		115.3
(0.7)
P 		144
C 158.8
(3)
P 		86.1
(-0.2)
P 		24.3
(-3)
M 		26.6
(-2.9)
A 		30.2
(-2.7)
P 		106.6
(0.7)
P 		135
avr 141.6
(3) 		91.6
(0.4) 		26.8
(-3) 		28.5
(-2.9) 		36.5
(-2.5) 		96.7
(0.7) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184328_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11035
Sequence Type Exemplar sequence
Representative Public ID T26C12.3 NCBI
Target Description T26C12.3 /REP_DB=WormBase Gene ID /WP=CE18287 /TR=O61858 /GB=AAC17556.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067907
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000018489 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3266006:3274329:-1 9/11 None
GENEFINDER00000018496 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3266144:3267671:-1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042298 1/11 Cross Hyb Matching Probes None
SNAP00000010360 1/11 Cross Hyb Matching Probes None
GENEFINDER00000010030 1/11 Cross Hyb Matching Probes None
SNAP00000010970 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3266018-3277147(-) 96.61 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500308 T26C12.3 [Caenorhabditis elegans] gb|AAC17556.2| Hypothetical protein T26C12.3 [Caenorhabditis elegans] 0.0
blast CAE58488 Hypothetical protein CBG01632 [Caenorhabditis briggsae] 1.0E-157
blast AAY86316 Hypothetical protein T26C12.6 [Caenorhabditis elegans] 4.0E-87
blast AAY86316 Hypothetical protein T26C12.6 [Caenorhabditis elegans] 2.0E-86
blast CAE61766 Hypothetical protein CBG05726 [Caenorhabditis briggsae] 3.0E-55
blast AAL32255 Hypothetical protein Y54G2A.33 [Caenorhabditis elegans] ref|NP_741349.1| Y54G2A.33 [Caenorhabditis elegans] 2.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 1.1E-26
Sequence
Target Sequence 
>C. ELEGANS:184328_S_AT
acacaatcttatttggctcttgtccaaaatcaattcacggctaattttgtggcatcatac
ggacataacgcatttggaagcagcgatgcaacattctggatcgggctcagcagagaccga
aactggaatccatttgtatttgataacggtgtaactctcggccagggatggagcaacttt
gacaaccaaaatagcttgaattttgttgccgaaagagtatcaaatgccaaatggaccaca
ttcaatgatagcacaactatgccgtttgtctgcagttatgatccaactgaacctcctgtt
ttttctccgccaactccaagcagagccccaacaactacaccatctaccaccacaactaca
cccggaccgaccactacatgtaaagtttcagaatactggattttggcatttttggatatg
ttgttttttttgcaagatatgaataaacttttggttgaaaaattctccctaaaaattata
acccgtgaagtgtcgttcattctaaaactgaattacagcccagagggatcaccacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACAATCTTATTTGGCTCTTGTCC 43 111 1360 Antisense
GAAGCAGCGATGCAACATTCTGGAT 550 341 1436 Antisense
TCTGGATCGGGCTCAGCAGAGACCG 613 607 1454 Antisense
TGATAACGGTGTAACTCTCGGCCAG 430 563 1500 Antisense
GGCCAGGGATGGAGCAACTTTGACA 14 543 1519 Antisense
AATAGCTTGAATTTTGTTGCCGAAA 123 173 1549 Antisense
GATAGCACAACTATGCCGTTTGTCT 203 425 1606 Antisense
GCCGTTTGTCTGCAGTTATGATCCA 39 285 1620 Antisense
TTATGATCCAACTGAACCTCCTGTT 611 679 1635 Antisense
AACCCGTGAAGTGTCGTTCATTCTA 89 143 1839 Antisense
TTACAGCCCAGAGGGATCACCACCA 533 683 1872 Antisense
Sequence Source Affymetrix Proprietary Database