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[184327_at]

Description Y73F8A.31 /REP_DB=WormBase Gene ID /WP=CE24649 /TR=Q9NA45 /GB=CAB60560.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 3.4
(-3)
A 		2.8
(-3)
A 		7.1
(-2.7)
A 		83.5
(3)
A 		81
B 2.6
(-3)
A 		11.6
(-1.8)
A 		7.7
(-2.3)
A 		45.9
(3)
A 		43
C 13.7
(-2.1)
A 		3.9
(-3)
A 		4.4
(-3)
A 		70.2
(3)
A 		66
avr 6.6
(-3) 		6.1
(-3) 		6.4
(-3) 		66.5
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 12.5
(-1.6)
A 		28.2
(1.2)
A 		8.2
(-2.4)
A 		24.4
(0.5)
A 		4.7
(-3)
A 		38.1
(3)
A 		33
B 4.1
(-3)
A 		4.7
(-2.9)
A 		10
(-1.9)
A 		14
(-1.1)
A 		18.4
(-0.2)
A 		35.1
(3)
A 		31
C 3.7
(-3)
A 		27.9
(0.6)
A 		44.3
(3)
A 		10.7
(-2)
A 		4
(-3)
A 		31.4
(1.1)
A 		41
avr 6.8
(-3) 		20.3
(-0.1) 		20.8
(-0) 		16.4
(-1) 		9
(-2.5) 		34.9
(3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.2
(-2.7)
A 		0.6
(-3)
A 		1.8
(-2.4)
A 		12.2
(3)
A 		12
B 0.8
(-3)
A 		2.9
(-1.6)
A 		1.8
(-2.3)
A 		9.8
(3)
A 		9
C 4.5
(-1.1)
A 		1.1
(-3)
A 		1.5
(-2.8)
A 		11.8
(3)
A 		11
avr 2.2
(-2.6) 		1.5
(-3) 		1.7
(-2.9) 		11.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.3
(-2.4)
A 		10
(3)
A 		1.8
(-2.7)
A 		6.2
(0.3)
A 		1.4
(-3)
A 		9.3
(2.5)
A 		9
B 1.4
(-3)
A 		1.6
(-2.9)
A 		2.4
(-2.5)
A 		3.7
(-1.8)
A 		7.5
(0.1)
A 		13.1
(3)
A 		12
C 1.4
(-2.9)
A 		8.5
(1.3)
A 		11.3
(3)
A 		2.1
(-2.5)
A 		1.3
(-3)
A 		10.5
(2.5)
A 		10
avr 1.7
(-3) 		6.7
(0.2) 		5.2
(-0.7) 		4
(-1.5) 		3.4
(-1.9) 		11
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184327_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8381
Sequence Type Exemplar sequence
Representative Public ID Y73F8A.31 NCBI
Target Description Y73F8A.31 /REP_DB=WormBase Gene ID /WP=CE24649 /TR=Q9NA45 /GB=CAB60560.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070465(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070465 NCBI Caenorhabditis elegans Y73F8A.31 (Y73F8A.31) mRNA, complete cds. 11/11 None
GENEFINDER00000030890 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15513748:15514426:1 11/11 None
Y73F8A.31 ENSEMBL cdna:known chromosome:CEL140:IV:15513748:15514426:1 gene:Y73F8A.31 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030833 4/11 Cross Hyb Matching Probes None
GENEFINDER00000030882 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15513753-15514432(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73F8A.31
Entrez Gene 190687 Entrez gene
SwissProt Q9NA45 EMBL-EBI
WormBase CE24649 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16051 carbohydrate biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60560 Hypothetical protein Y73F8A.31 [Caenorhabditis elegans] ref|NP_502866.1| Y73F8A.31 [Caenorhabditis elegans] 2.0E-96
blast CAB04823 Hypothetical protein T25E12.5 [Caenorhabditis elegans] ref|NP_507238.1| T25E12.5 [Caenorhabditis elegans] 3.0E-68
blast CAE67686 Hypothetical protein CBG13253 [Caenorhabditis briggsae] 2.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR002495 EMBL-EBI Glycosyl transferase, family 8 1.5E-20
Sequence
Target Sequence 
>C. ELEGANS:184327_AT
atgaccgatgcgtggatcgaggggcggcaacgatcaatatgctcaaggagcactcaccct
tctcaactcgcttcacgcatcggcaacggaagaattcattgtttgatcactaatgagatt
tcgaattctgtccgtgaagagttggagaacaaattcgacgaagtgaatatcgtcgacttc
ttcaacagcaacgactcggagaatctctcgttgatcggccgcccggatctagctgttttc
ttggatgctgacaccatgatcatcaggaactgtgatgaactcttcgaaagacccgacttc
tctgccgccgccgatatcggatggccggatatgttcaattcgggagttttcgtgttcacg
ccgtcgctcaccgtctatcgagctcttctcgctctcgccacctcgtccggctcattcgat
gatggagatcaaggcctactaatcgagtacttctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACCGATGCGTGGATCGAGGGGC 260 45 13 Antisense
CGATGCGTGGATCGAGGGGCGGCAA 87 249 18 Antisense
GGGGCGGCAACGATCAATATGCTCA 12 499 33 Antisense
TATGCTCAAGGAGCACTCACCCTTC 66 657 50 Antisense
GGCAACGGAAGAATTCATTGTTTGA 52 535 94 Antisense
ATGAGATTTCGAATTCTGTCCGTGA 529 45 125 Antisense
GAATTCTGTCCGTGAAGAGTTGGAG 152 325 135 Antisense
ATCGTCGACTTCTTCAACAGCAACG 336 35 181 Antisense
CAGCAACGACTCGGAGAATCTCTCG 404 203 198 Antisense
GATGGAGATCAAGGCCTACTAATCG 292 407 433 Antisense
GGCCTACTAATCGAGTACTTCTCAA 591 543 445 Antisense
Sequence Source Affymetrix Proprietary Database