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[184325_s_at]

Description C13F10.7 /REP_DB=WormBase Gene ID /WP=CE08148 /TR=O01489 /GB=AAC47967.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 87      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 88      6grp_total > 78      4grp_total > 09      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1113
1 2 3 4 range
A 726.1
(-3)
P 		892.5
(-2.1)
P 		838.2
(-2.4)
P 		1839.5
(3)
P 		1113
B 789.5
(-2.7)
P 		917.9
(-1.9)
P 		735.4
(-3)
P 		1775.3
(3)
P 		1040
C 863.2
(-3)
P 		1017.9
(-2)
P 		1011.5
(-2.1)
P 		1815.5
(3)
P 		952
avr 792.9
(-3) 		942.8
(-2.1) 		861.7
(-2.6) 		1810.1
(3) 		1017

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1498
1 2 3 4 5 6 range
A 1203.4
(-1.3)
P 		882.7
(-3)
P 		895
(-2.9)
P 		1204.3
(-1.3)
P 		1550.6
(0.6)
P 		2011.3
(3)
P 		1129
B 1099
(-1)
P 		832.1
(-2.3)
P 		672.1
(-3)
P 		1040.2
(-1.3)
P 		1326.4
(0)
P 		1978.7
(3)
P 		1307
C 840.9
(-3)
P 		947
(-2.5)
P 		921.9
(-2.6)
P 		1006.9
(-2.3)
P 		1379.5
(-0.6)
P 		2170.4
(3)
P 		1330
avr 1047.8
(-1.9) 		887.3
(-2.7) 		829.7
(-3) 		1083.8
(-1.8) 		1418.8
(-0.1) 		2053.5
(3) 		1224
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 264.4
(2.6)
P 		193.7
(-3)
P 		219.1
(-1)
P 		269.3
(3)
P 		76
B 251.8
(-0.7)
P 		226.7
(-1.4)
P 		170.4
(-3)
P 		378.3
(3)
P 		208
C 285.7
(-3)
P 		292.7
(-2.4)
P 		352.5
(3)
P 		306.1
(-1.2)
P 		67
avr 267.3
(-0.8) 		237.7
(-3) 		247.3
(-2.3) 		317.9
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 575
1 2 3 4 5 6 range
A 221.8
(-2.5)
P 		313.9
(-0.6)
P 		194.9
(-3)
P 		305.4
(-0.8)
P 		467.9
(2.6)
P 		489.7
(3)
P 		295
B 382.4
(-0.7)
P 		277
(-1.8)
P 		163.2
(-3)
P 		275.5
(-1.8)
P 		538.9
(0.9)
P 		737.9
(3)
P 		575
C 311.7
(-1.7)
P 		289
(-2)
P 		234.6
(-2.6)
P 		202.5
(-3)
P 		446.4
(-0.2)
P 		726.5
(3)
P 		524
avr 305.3
(-1.6) 		293.3
(-1.7) 		197.6
(-3) 		261.1
(-2.2) 		484.4
(0.8) 		651.4
(3) 		454
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184325_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12203
Sequence Type Exemplar sequence
Representative Public ID C13F10.7 NCBI
Target Description C13F10.7 /REP_DB=WormBase Gene ID /WP=CE08148 /TR=O01489 /GB=AAC47967.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072431(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072431 NCBI Caenorhabditis elegans C13F10.7 (C13F10.7) mRNA, complete cds. 11/11 None
SNAP00000004761 ENSEMBL cdna:SNAP chromosome:CEL140:V:7224929:7225845:-1 11/11 None
GENEFINDER00000004763 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7224929:7225845:-1 11/11 None
C13F10.7 ENSEMBL cdna:known chromosome:CEL140:V:7224642:7225845:-1 gene:C13F10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7224929-7225846(-) 74.59 100.0
Public Domain and Genome References
Gene Title
Ensembl C13F10.7
Entrez Gene 179111 Entrez gene
SwissProt O01489 EMBL-EBI
WormBase CE08148 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC47967 Hypothetical protein C13F10.7 [Caenorhabditis elegans] ref|NP_504832.1| C13F10.7 [Caenorhabditis elegans] 2.0E-48
blast CAE72024 Hypothetical protein CBG19106 [Caenorhabditis briggsae] 6.0E-41
Sequence
Target Sequence 
>C. ELEGANS:184325_S_AT
gtcagcgttcccatcaagatacgacccgaacgcctttgtagatatatcaggtgccgcaat
atctgcccccgcagtcacgggagcatgcaaaagatgtggatatccgggtcatctatactt
ccagtgtcgaaatcacattgaagtacgtccaaatgtatcgacaaaagcgtacgaggtcag
ttcgacatcatctgaatcaagtgacgacgagactccgctcattgctttggaaaagcagcg
gaaaaaggagaaaaagctgaaaaagaaggcgaaaaaagaaaagaagaaggcgaagaaact
cgagaaaaaggagagaaagaaggaacggaaagagaagagaaggcgacgagatgattctga
tgatagtagtgattctgatgaggaagaggatagaaaaaggaagaagagcaaggaaagtaa
aaaggaaaaaagaaaacgccgtcattcttcctcagatgatagatcagcttcttccgattc
tgatgatgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAGCGTTCCCATCAAGATACGAC 592 463 159 Antisense
ACGACCCGAACGCCTTTGTAGATAT 476 91 179 Antisense
TATATCAGGTGCCGCAATATCTGCC 579 661 201 Antisense
CCCCCGCAGTCACGGGAGCATGCAA 618 261 224 Antisense
GTGGATATCCGGGTCATCTATACTT 32 491 254 Antisense
GGTCATCTATACTTCCAGTGTCGAA 654 503 265 Antisense
GTACGAGGTCAGTTCGACATCATCT 458 457 327 Antisense
TCAAGTGACGACGAGACTCCGCTCA 141 633 355 Antisense
GACTCCGCTCATTGCTTTGGAAAAG 131 375 369 Antisense
GCCGTCATTCTTCCTCAGATGATAG 536 283 596 Antisense
AGCTTCTTCCGATTCTGATGATGAC 347 79 624 Antisense
Sequence Source Affymetrix Proprietary Database