[Home] | [Total List]

[184322_at]

Description K08H10.2A /REP_DB=WormBase Gene ID /WP=CE21051 /TR=Q9XTH4 /GB=CAB05548.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 48      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 0      6grp_total > 37      4grp_total > 17      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2147
1 2 3 4 range
A 1315.2
(-3)
P 		1875
(-1.3)
P 		1560.7
(-2.3)
P 		3301.2
(3)
P 		1986
B 1334.9
(-3)
P 		1790.2
(-1.6)
P 		1650.3
(-2)
P 		3228.6
(3)
P 		1894
C 1154
(-3)
P 		1718.3
(-0.9)
P 		1692.3
(-1)
P 		2734.2
(3)
P 		1580
avr 1268
(-3) 		1794.5
(-1.3) 		1634.4
(-1.8) 		3088
(3) 		1820

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1332
1 2 3 4 5 6 range
A 1837.6
(1.5)
P 		2159.1
(3)
P 		857.2
(-3)
P 		1095.3
(-1.9)
P 		1168.8
(-1.6)
P 		2150.2
(3)
P 		1302
B 1897.4
(3)
P 		1729.9
(1.9)
P 		1088.1
(-2.3)
P 		975.9
(-3)
P 		1118.3
(-2.1)
P 		1837.9
(2.6)
P 		922
C 2179.5
(3)
P 		1612.7
(0.4)
P 		1710.8
(0.9)
P 		847.4
(-3)
P 		1578.2
(0.3)
P 		1618.8
(0.5)
P 		1332
avr 1971.5
(3) 		1833.9
(2.2) 		1218.7
(-1.5) 		972.9
(-3) 		1288.4
(-1.1) 		1869
(2.4) 		999
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 306
1 2 3 4 range
A 478.9
(2.7)
P 		407
(-3)
P 		408
(-2.9)
P 		483.2
(3)
P 		76
B 425.7
(-2.1)
P 		442.1
(-1.8)
P 		382.4
(-3)
P 		688
(3)
P 		306
C 382
(-3)
P 		494
(0.2)
P 		589.8
(3)
P 		461
(-0.7)
P 		208
avr 428.9
(-3) 		447.7
(-2) 		460.1
(-1.4) 		544.1
(3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 637
1 2 3 4 5 6 range
A 338.7
(-1.4)
P 		767.9
(3)
P 		186.7
(-3)
P 		277.8
(-2.1)
P 		352.7
(-1.3)
P 		523.5
(0.5)
P 		581
B 660.2
(2.6)
P 		575.8
(1.5)
P 		264.2
(-2.9)
P 		258.5
(-3)
P 		454.3
(-0.2)
P 		685.3
(3)
P 		427
C 807.8
(3)
P 		492.1
(0)
P 		435.4
(-0.5)
P 		170.4
(-3)
P 		510.7
(0.2)
P 		541.9
(0.5)
P 		637
avr 602.2
(2.8) 		611.9
(3) 		295.4
(-2) 		235.6
(-3) 		439.2
(0.2) 		583.6
(2.5) 		376
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184322_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11733
Sequence Type Exemplar sequence
Representative Public ID K08H10.2A NCBI
Target Description K08H10.2A /REP_DB=WormBase Gene ID /WP=CE21051 /TR=Q9XTH4 /GB=CAB05548.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073174(11), NM_001028873(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073174 NCBI Caenorhabditis elegans K08H10.2a (K08H10.2) mRNA, complete cds. 11/11 None
NM_001028873 NCBI Caenorhabditis elegans K08H10.2b (K08H10.2) mRNA, complete cds. 11/11 None
SNAP00000005156 ENSEMBL cdna:SNAP chromosome:CEL140:V:10023145:10027646:1 10/11 None
GENEFINDER00000005158 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10021973:10028042:1 10/11 None
K08H10.2a ENSEMBL cdna:known chromosome:CEL140:V:10025080:10030737:1 gene:K08H10.2 11/11 A 
K08H10.2b ENSEMBL cdna:known chromosome:CEL140:V:10026243:10030718:1 gene:K08H10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037763 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10026242-10030302(+) 100.0 100.0
Public Domain and Genome References
Ensembl K08H10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98279 Hypothetical protein K08H10.2a [Caenorhabditis elegans] emb|CAB05548.2| Hypothetical protein K08H10.2a [Caenorhabditis elegans] ref|NP_505575.2| K08H10.2a [Caenorhabditis elegans] 0.0
blast CAA98278 Hypothetical protein K08H10.2b [Caenorhabditis elegans] emb|CAI46598.1| Hypothetical protein K08H10.2b [Caenorhabditis elegans] ref|NP_001024044.1| K08H10.2b [Caenorhabditis elegans] 0.0
blast CAB05543 Hypothetical protein K08H10.1 [Caenorhabditis elegans] ref|NP_001024042.1| plant Late Embryo Abundant (LEA) related family member (lea-1) [Caenorhabditis elegans] gb|AAB69446.1| Ce-LEA [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.3E-14
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 1.6E-14
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 8.0E-9
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.0E-17
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 6.0E-9
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 9.6E-11
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 5.8E-11
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 8.7E-19
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 5.1E-21
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.0E-18
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 3.4E-10
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 1.3E-15
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 3.0E-7
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 1.9E-20
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.7E-12
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.8E-22
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 3.2E-7
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.3E-14
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 1.6E-14
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 8.0E-9
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.0E-17
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 6.0E-9
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 9.6E-11
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 5.8E-11
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 8.7E-19
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 5.1E-21
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.0E-18
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 3.4E-10
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 1.3E-15
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 3.0E-7
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 1.9E-20
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.7E-12
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.8E-22
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 3.2E-7
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.3E-14
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 1.6E-14
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 8.0E-9
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 2.0E-17
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 6.0E-9
Pfam IPR004238 EMBL-EBI Late embryogenesis abundant protein 9.6E-11
Sequence
Target Sequence 
>C. ELEGANS:184322_AT
gaacacgctgatcatgccaaaggaaaaattgccgatgcctgggatgctaccaaagacaag
gctgatgacgtgaaagacacagctggagaaacattcgagaacatccatcattcagctacc
acggctgtggacgaggctagagaaaacgctgctgcagcaaaggacaatgcttcggaaagt
gcagagtctactaagtattccatcgtcgacactgccaagggtattgctcatagtgccgag
gaaaagctcgagggagctgcttctgttgttggagatgctgttcaatacgtcaatgattcg
gccacttcagctgtcagcaccgttgctgactccgtatcgtccgctgttcacacagtcgga
gagaaacttcacgacgctgaagaagctgcatcaaattatatgcacggagcacataaatcc
gcatcggaagctgcccatgatactaaggaagcagttacatcgaaggccgctgaagtcgag
aacttgaaaactggaactcttccatcaccgaaaagtggaaatacggacactcttcgctcg
actcgttctgaagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACACGCTGATCATGCCAAAGGAA 127 353 838 Antisense
AAATTGCCGATGCCTGGGATGCTAC 426 115 863 Antisense
CCATCATTCAGCTACCACGGCTGTG 699 269 942 Antisense
CCACGGCTGTGGACGAGGCTAGAGA 445 273 956 Antisense
TAAGTATTCCATCGTCGACACTGCC 565 637 1029 Antisense
GACACTGCCAAGGGTATTGCTCATA 522 367 1045 Antisense
CGAGGGAGCTGCTTCTGTTGTTGGA 624 249 1086 Antisense
TACGTCAATGATTCGGCCACTTCAG 474 647 1123 Antisense
TAAATCCGCATCGGAAGCTGCCCAT 147 641 1251 Antisense
AGTTACATCGAAGGCCGCTGAAGTC 640 63 1290 Antisense
TCTTCGCTCGACTCGTTCTGAAGGA 491 617 1368 Antisense
Sequence Source Affymetrix Proprietary Database