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[184320_at]

Description C14F11.4 /REP_DB=WormBase Gene ID /WP=CE02480 /TR=Q17991 /GB=AAA80363.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 34      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 31.4
(-1.7)
A 		92.9
(3)
P 		14
(-3)
A 		71.7
(1.4)
A 		79
B 10.1
(-3)
A 		25.9
(-0.1)
A 		42.5
(3)
A 		19.6
(-1.2)
A 		32
C 23.9
(-2.3)
A 		41.2
(1)
A 		20.4
(-3)
A 		51.5
(3)
A 		31
avr 21.8
(-3) 		53.3
(3) 		25.6
(-2.3) 		47.6
(1.9) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1206
1 2 3 4 5 6 range
A 52
(-2.9)
A 		30.3
(-3)
A 		64.1
(-2.8)
P 		102.3
(-2.6)
P 		1101.1
(3)
P 		839.4
(1.5)
P 		1071
B 10.6
(-3)
A 		18.2
(-3)
A 		34.3
(-2.9)
A 		62.8
(-2.7)
P 		989.4
(3)
P 		743.8
(1.5)
P 		979
C 70.2
(-2.8)
P 		27.1
(-3)
A 		40.7
(-2.9)
A 		102.7
(-2.6)
A 		1216.4
(3)
P 		818.9
(1)
P 		1189
avr 44.3
(-2.9) 		25.2
(-3) 		46.4
(-2.9) 		89.3
(-2.6) 		1102.3
(3) 		800.7
(1.3) 		1077
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 11.4
(-0.2)
A 		20.2
(3)
P 		3.7
(-3)
A 		10.5
(-0.5)
A 		17
B 3.2
(-3)
A 		6.4
(-0.1)
A 		9.8
(3)
A 		4.2
(-2.1)
A 		7
C 7.9
(-2)
A 		11.9
(3)
A 		7.1
(-3)
A 		8.7
(-1)
A 		5
avr 7.5
(-2.4) 		12.8
(3) 		6.9
(-3) 		7.8
(-2.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 398
1 2 3 4 5 6 range
A 9.6
(-3)
A 		10.8
(-3)
A 		14
(-2.9)
P 		25.9
(-2.7)
P 		332.3
(3)
P 		204.4
(0.6)
P 		323
B 3.7
(-3)
A 		6.1
(-3)
A 		8.3
(-2.9)
A 		16.6
(-2.8)
P 		402
(3)
P 		277.4
(1.1)
P 		398
C 26
(-2.7)
P 		8.3
(-3)
A 		10.4
(-3)
A 		20.7
(-2.8)
A 		393.6
(3)
P 		274.1
(1.1)
P 		385
avr 13.1
(-2.9) 		8.4
(-3) 		10.9
(-3) 		21.1
(-2.8) 		376
(3) 		252
(1) 		368
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184320_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16564
Sequence Type Exemplar sequence
Representative Public ID C14F11.4 NCBI
Target Description C14F11.4 /REP_DB=WormBase Gene ID /WP=CE02480 /TR=Q17991 /GB=AAA80363.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029225(9), NM_001029226(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029225 NCBI Caenorhabditis elegans C14F11.4a (C14F11.4) mRNA, complete cds. 9/11 None
NM_001029226 NCBI Caenorhabditis elegans C14F11.4b (C14F11.4) mRNA, complete cds. 9/11 None
SNAP00000008174 ENSEMBL cdna:SNAP chromosome:CEL140:X:6231084:6232929:-1 11/11 None
GENEFINDER00000008179 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6231084:6232929:-1 11/11 None
C14F11.4b ENSEMBL cdna:known chromosome:CEL140:X:6231265:6232929:-1 gene:C14F11.4 9/11 None
C14F11.4a ENSEMBL cdna:known chromosome:CEL140:X:6231265:6232929:-1 gene:C14F11.4 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6231083-6232929(-) 100.0 100.0
Public Domain and Genome References
Ensembl C14F11.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU05591 Hypothetical protein C14F11.4a [Caenorhabditis elegans] ref|NP_001024396.1| C14F11.4a [Caenorhabditis elegans] 1.0E-162
blast AAU05592 Hypothetical protein C14F11.4b [Caenorhabditis elegans] ref|NP_001024397.1| C14F11.4b [Caenorhabditis elegans] 1.0E-159
blast AAU05591 Hypothetical protein C14F11.4a [Caenorhabditis elegans] ref|NP_001024396.1| C14F11.4a [Caenorhabditis elegans] 1.0E-158
blast AAU05592 Hypothetical protein C14F11.4b [Caenorhabditis elegans] ref|NP_001024397.1| C14F11.4b [Caenorhabditis elegans] 1.0E-157
blast AAU05591 Hypothetical protein C14F11.4a [Caenorhabditis elegans] ref|NP_001024396.1| C14F11.4a [Caenorhabditis elegans] 1.0E-157
Sequence
Target Sequence 
>C. ELEGANS:184320_AT
gatatcttcgcaaccagcatggcattcaactccaggtagaccatctaatgcagcttctga
ctcatagctctcgtccggcatctgctattggctcaagacccggttcagctgcggaaaaga
tgagtagtgtttcccgctcatcgtcaaaaagttcaaacttgaaagccaaccttgtcatgc
caactcgtcgttctccaccaccgaaaaccccaagtgaagctagctacgcatcgactcgcc
caaaaactgagcgttcgtcatctcacaaatcggcaagcacggtcacatcatctgcaacta
tcacaacattggacagtgccaaaagaaagcctctcgcaaaaaatgcttcaccaaagccac
caagaagtccggtgttagaagttttggaaagaacaaaaagtattgaaactatgaatgaaa
ttcacacttctcaaaagctcgacgaattggccatcgaaacatcatcttctggcagttaca
tcgctcctctacccatcaacggacgtcgtgattctcaacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATCTTCGCAACCAGCATGGCAT 426 425 473 Antisense
GGCATTCAACTCCAGGTAGACCATC 437 537 493 Antisense
ATGCAGCTTCTGACTCATAGCTCTC 541 43 520 Antisense
TCAAGACCCGGTTCAGCTGCGGAAA 480 627 565 Antisense
TTTCCCGCTCATCGTCAAAAAGTTC 516 669 602 Antisense
TTGAAAGCCAACCTTGTCATGCCAA 130 705 631 Antisense
AGTGAAGCTAGCTACGCATCGACTC 450 59 685 Antisense
GTTCGTCATCTCACAAATCGGCAAG 326 437 725 Antisense
GCAAGCACGGTCACATCATCTGCAA 309 321 745 Antisense
CATCTTCTGGCAGTTACATCGCTCC 458 213 935 Antisense
CAACGGACGTCGTGATTCTCAACCA 694 187 969 Antisense
Sequence Source Affymetrix Proprietary Database