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[184318_at]

Description Y37D8A.22 /REP_DB=WormBase Gene ID /WP=CE20225 /TR=Q9XWU8 /GB=CAA21543.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 25      6grp_total > 46      4grp_total > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 146
(2.9)
P 		146.7
(3)
P 		117.8
(-3)
A 		146.3
(2.9)
A 		29
B 132.9
(3)
P 		130.5
(2.7)
A 		130.1
(2.7)
P 		75.6
(-3)
A 		57
C 138.3
(3)
P 		108.2
(-3)
P 		119.4
(-0.8)
P 		129.1
(1.2)
P 		30
avr 139.1
(3) 		128.5
(0.1) 		122.4
(-1.5) 		117
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 112
(3)
A 		73.6
(-2.4)
A 		95.3
(0.6)
P 		72.7
(-2.5)
A 		69.4
(-3)
A 		108.7
(2.5)
A 		43
B 86.7
(1.3)
A 		101.4
(3)
A 		88.5
(1.6)
P 		48
(-3)
A 		72.9
(-0.2)
A 		91.9
(1.9)
P 		53
C 76.2
(-2.3)
A 		90.7
(1.7)
A 		73.6
(-3)
A 		95.3
(3)
A 		82.7
(-0.5)
P 		79.8
(-1.3)
A 		22
avr 91.6
(2.5) 		88.6
(1.6) 		85.8
(0.9) 		72
(-3) 		75
(-2.2) 		93.5
(3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 53.2
(3)
P 		31.8
(-1)
P 		30.8
(-1.2)
A 		21.4
(-3)
A 		32
B 42.4
(3)
P 		32.2
(0.7)
A 		30.1
(0.2)
P 		16.1
(-3)
A 		26
C 45.8
(3)
P 		31.1
(-0.7)
P 		41.6
(2)
P 		21.8
(-3)
P 		24
avr 47.1
(3) 		31.7
(-0.4) 		34.2
(0.2) 		19.8
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 20.6
(-1.4)
A 		26.2
(2.8)
A 		20.8
(-1.2)
P 		18.4
(-3)
A 		21
(-1.1)
A 		26.5
(3)
A 		8
B 30.2
(1.9)
A 		33.8
(2.9)
A 		21.5
(-0.6)
P 		12.7
(-3)
A 		29.6
(1.7)
A 		34.3
(3)
P 		22
C 28.3
(3)
A 		27.7
(2.6)
A 		18.7
(-3)
A 		19.2
(-2.7)
A 		26.8
(2.1)
P 		26.7
(2)
A 		10
avr 26.4
(1.6) 		29.2
(3) 		20.3
(-1.3) 		16.8
(-3) 		25.8
(1.4) 		29.2
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184318_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7718
Sequence Type Exemplar sequence
Representative Public ID Y37D8A.22 NCBI
Target Description Y37D8A.22 /REP_DB=WormBase Gene ID /WP=CE20225 /TR=Q9XWU8 /GB=CAA21543.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067287(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067287 NCBI Caenorhabditis elegans Y37D8A.22 (Y37D8A.22) mRNA, complete cds. 11/11 None
Y37D8A.22 ENSEMBL cdna:known chromosome:CEL140:III:12934233:12940585:1 gene:Y37D8A.22 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028787 8/11 Cross Hyb Matching Probes None
GENEFINDER00000028812 6/11 Cross Hyb Matching Probes None
GENEFINDER00000028790 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12934230-12940284(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37D8A.22
Entrez Gene 176712 Entrez gene
SwissProt Q9XWU8 EMBL-EBI
WormBase CE31831 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264576_AT expressed protein at
ATGENOME1:17132_AT expressed protein at
CANINE_2:CFAAFFX.27036.1.S1_AT similar to transmembrane protein 49 cfa
DROSOPHILA_2:1634561_S_AT dm
CHICKEN:GGA.1722.1.S1_AT transmembrane protein 49 gga
HU35KSUBA:R21443_AT transmembrane protein 49 hs
HU35KSUBA:RC_AA489012_AT transmembrane protein 49 hs
HU35KSUBC:RC_N62339_AT transmembrane protein 49 hs
HG-U133A:220990_S_AT transmembrane protein 49 hs
HG-U133_PLUS_2:220990_S_AT transmembrane protein 49 hs
HG-U133A_2:220990_S_AT transmembrane protein 49 hs
U133_X3P:G13569906_3P_S_AT transmembrane protein 49 hs
U133_X3P:HS2.397084.1.S1_3P_AT transmembrane protein 49 hs
HG-U133_PLUS_2:1569003_AT transmembrane protein 49 hs
HG-U95B:45347_AT transmembrane protein 49 hs
HG-U133_PLUS_2:231697_S_AT Transmembrane protein 49 hs
HG-U133B:231697_S_AT Transmembrane protein 49 hs
HG-U95C:55146_AT Transmembrane protein 49 hs
HG-U95C:63912_R_AT Transmembrane protein 49 hs
U133_X3P:HS.79572.1.S1_3P_AT Transmembrane protein 49 hs
MOUSE430_2:1421491_A_AT transmembrane protein 49 mm
MOE430A:1421491_A_AT transmembrane protein 49 mm
MOUSE430A_2:1421491_A_AT transmembrane protein 49 mm
MG-U74AV2:95444_AT transmembrane protein 49 mm
MOE430A:1423722_AT transmembrane protein 49 mm
MOUSE430A_2:1423722_AT transmembrane protein 49 mm
MOUSE430_2:1423722_AT transmembrane protein 49 mm
MOUSE430_2:1444820_AT Transmembrane protein 49, mRNA (cDNA clone MGC:7590 IMAGE:3493738) mm
MOE430B:1444820_AT Transmembrane protein 49, mRNA (cDNA clone MGC:7590 IMAGE:3493738) mm
MU19KSUBB:TC29158_AT Transmembrane protein 49, mRNA (cDNA clone MGC:7590 IMAGE:3493738) mm
MU19KSUBB:TC33804_AT Transmembrane protein 49, mRNA (cDNA clone MGC:7590 IMAGE:3493738) mm
MU19KSUBB:TC33804_G_AT Transmembrane protein 49, mRNA (cDNA clone MGC:7590 IMAGE:3493738) mm
MU19KSUBC:TC34980_AT Transmembrane protein 49, mRNA (cDNA clone MGC:7590 IMAGE:3493738) mm
MU19KSUBC:TC34980_G_AT Transmembrane protein 49, mRNA (cDNA clone MGC:7590 IMAGE:3493738) mm
MU19KSUBC:TC39418_F_AT Transmembrane protein 49, mRNA (cDNA clone MGC:7590 IMAGE:3493738) mm
MU19KSUBC:TC39420_F_AT Transmembrane protein 49, mRNA (cDNA clone MGC:7590 IMAGE:3493738) mm
MU19KSUBC:TC39420_I_AT Transmembrane protein 49, mRNA (cDNA clone MGC:7590 IMAGE:3493738) mm
RG-U34A:RC_AA859954_AT vacuole membrane protein 1 rn
RAE230A:1370807_AT vacuole membrane protein 1 rn
RAT230_2:1370807_AT vacuole membrane protein 1 rn
RAE230B:1383005_AT Vacuole membrane protein 1 rn
RAT230_2:1383005_AT Vacuole membrane protein 1 rn
RAE230B:1395443_AT Vacuole membrane protein 1 rn
RAT230_2:1395443_AT Vacuole membrane protein 1 rn
RG-U34B:RC_AA956659_AT Vacuole membrane protein 1 rn
Protein Similarities
Method ID Description E-Value
blast CAA21543 Hypothetical protein Y37D8A.22 [Caenorhabditis elegans] ref|NP_499688.2| Y37D8A.22 [Caenorhabditis elegans] 0.0
blast CAE69544 Hypothetical protein CBG15756 [Caenorhabditis briggsae] 0.0
blast NP_996943 hypothetical protein LOC336789 [Danio rerio] gb|AAH66412.1| Vacuole membrane protein 1 [Danio rerio] 7.0E-96
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499688.2 4 89-106,126-148,288-310,377-399
Y37D8A.22 4 89-106,126-148,288-310,377-399
Sequence
Target Sequence 
>C. ELEGANS:184318_AT
gagctcccaccgtattttatggctcgagccgcccgaatctctggccaggagcctgacgat
gaagaatatcgagagtttttggagttgatgaatgctgacaaggaaagcgatgcagatcag
aagttgagcattgttgaacgggcgaaaagctgggtggagcacaatattcatagattagga
ttcccgggaattttgctgttcgcctcgattccgaatccgcttttcgatttggctggaatc
acttgtggacactttttggtgccgttttggagcttttttggagcaactttgattggaaaa
gcgctggttaaaatgcatgttcagatgggatttgtcattctcgcattcagcgaccatcat
gccgaaaactttgtgaaaatactcgagaaaattccggctgtcgggccatatattcgtcaa
ccaatcagtgatttactggagaaacagagaaaagcgcttcataagacgccaggcgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTCCCACCGTATTTTATGGCTC 467 387 778 Antisense
GAATCTCTGGCCAGGAGCCTGACGA 102 329 812 Antisense
GGATTCCCGGGAATTTTGCTGTTCG 6 509 955 Antisense
GAATCCGCTTTTCGATTTGGCTGGA 630 329 990 Antisense
GGCTGGAATCACTTGTGGACACTTT 554 539 1008 Antisense
TGGACACTTTTTGGTGCCGTTTTGG 510 547 1023 Antisense
GTCATTCTCGCATTCAGCGACCATC 390 467 1111 Antisense
GCGACCATCATGCCGAAAACTTTGT 542 289 1127 Antisense
AAAATTCCGGCTGTCGGGCCATATA 691 133 1165 Antisense
GGGCCATATATTCGTCAACCAATCA 51 493 1180 Antisense
GCGCTTCATAAGACGCCAGGCGAGC 521 285 1231 Antisense
Sequence Source Affymetrix Proprietary Database