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[184317_at]

Description C04E12.1 /REP_DB=WormBase Gene ID /WP=CE16814 /TR=O76683 /GB=AAC27087.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 19      6grp_cgc > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 12.1
(-3)
A 		29.5
(-1)
A 		35.9
(-0.2)
A 		63.3
(3)
P 		51
B 24.5
(2.5)
A 		26.4
(3)
A 		2.7
(-3)
A 		15.2
(0.2)
A 		24
C 18.8
(-1.8)
A 		24.2
(-1.2)
A 		8
(-3)
A 		62
(3)
P 		54
avr 18.5
(-2.4) 		26.7
(-0.9) 		15.5
(-3) 		46.8
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 18.7
(2.9)
A 		6.8
(-1)
A 		19
(3)
A 		0.7
(-3)
A 		11.9
(0.7)
A 		9.9
(0)
A 		18
B 3.4
(-3)
A 		5.6
(-2.4)
A 		5.2
(-2.5)
A 		24.9
(3)
A 		14
(-0)
A 		20
(1.6)
A 		22
C 5.8
(-2.6)
A 		7.1
(-2.3)
A 		30.9
(3)
A 		3.8
(-3)
A 		5
(-2.7)
A 		14.4
(-0.7)
A 		27
avr 9.3
(-1.6) 		6.5
(-3) 		18.4
(3) 		9.8
(-1.3) 		10.3
(-1.1) 		14.8
(1.2) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.4
(-3)
A 		6.4
(-0.6)
A 		9.4
(3)
A 		9.3
(2.9)
P 		5
B 7.8
(3)
A 		6.5
(1.9)
A 		0.6
(-3)
A 		3.2
(-0.8)
A 		7
C 6.2
(-0.4)
A 		7
(0.3)
A 		2.8
(-3)
A 		10.5
(3)
P 		8
avr 6.1
(0.2) 		6.6
(1.1) 		4.3
(-3) 		7.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 3.4
(1.9)
A 		2.4
(0.4)
A 		4.1
(3)
A 		0.2
(-3)
A 		3.6
(2.2)
A 		2.4
(0.4)
A 		4
B 1.2
(-3)
A 		1.9
(-2.3)
A 		1.3
(-2.9)
A 		6.6
(2.2)
A 		5.7
(1.4)
A 		7.4
(3)
A 		6
C 2.2
(-1.8)
A 		2.2
(-1.8)
A 		7.9
(3)
A 		0.8
(-3)
A 		1.6
(-2.3)
A 		4.8
(0.4)
A 		7
avr 2.3
(-2.8) 		2.2
(-3) 		4.4
(1.9) 		2.5
(-2.3) 		3.6
(0.1) 		4.9
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184317_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14851
Sequence Type Exemplar sequence
Representative Public ID C04E12.1 NCBI
Target Description C04E12.1 /REP_DB=WormBase Gene ID /WP=CE16814 /TR=O76683 /GB=AAC27087.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071514
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C04E12.1 ENSEMBL cdna:pseudogene chromosome:CEL140:V:3383750:3384971:1 gene:C04E12.1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071514 1/11 Cross Hyb Matching Probes None
GENEFINDER00000011255 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029762 8/11 Cross Hyb Matching Probes None
F35F10.2 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3384311-3384971(+) 100.0 100.0
chrV:3308886-3309515(+) 91.49 91.49
Public Domain and Genome References
Ensembl C04E12.1
Sequence
Target Sequence 
>C. ELEGANS:184317_AT
atatccgcaatgccacgtgactgtggagttttgcgatgctcagttgatccgtgttatttc
gatttttggacaactgatagagcggtgatatttgctttcaacattgcattttccggttta
ctttctacaagactgttaattttcgataaatcactcggtcatcatgctaacagtgagcat
tcaaagctctggtcgacgctgccaacgtatttctatgtgattttgtgccaacagtatcca
attatgttcttcctaaattcccattttcaagtttcaaggtctcggaacattggaccttac
gtttatattataaaacttgttggaagtgctgtagaatcatattttattttgaagattttg
aagagaagaagcgctcgaacaagtattgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCCGCAATGCCACGTGACTGTG 439 19 19 Antisense
AATGCCACGTGACTGTGGAGTTTTG 455 167 27 Antisense
ATGCTCAGTTGATCCGTGTTATTTC 219 43 54 Antisense
GAGCGGTGATATTTGCTTTCAACAT 175 387 98 Antisense
ATTTGCTTTCAACATTGCATTTTCC 651 17 108 Antisense
CTACAAGACTGTTAATTTTCGATAA 636 221 143 Antisense
TCGATAAATCACTCGGTCATCATGC 32 603 161 Antisense
CATTCAAAGCTCTGGTCGACGCTGC 361 211 196 Antisense
CAAGTTTCAAGGTCTCGGAACATTG 19 157 286 Antisense
CATTGGACCTTACGTTTATATTATA 279 217 306 Antisense
AGAAGCGCTCGAACAAGTATTGCAA 26 75 385 Antisense
Sequence Source Affymetrix Proprietary Database