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[184316_at]

Description F15E11.4 /REP_DB=WormBase Gene ID /WP=CE17002 /TR=O44600 /GB=AAB94201.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 40.9
(0.4)
M 		24.5
(-1.5)
A 		11.8
(-3)
A 		63.5
(3)
A 		52
B 54.4
(2.3)
P 		19.1
(-3)
A 		31.8
(-1.1)
A 		59
(3)
A 		40
C 80.2
(3)
P 		51.6
(0.5)
P 		12.5
(-3)
A 		40.4
(-0.5)
A 		68
avr 58.5
(3) 		31.7
(-1) 		18.7
(-3) 		54.3
(2.4) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 44.7
(1)
A 		32.8
(-0.8)
A 		34
(-0.6)
A 		34.5
(-0.5)
A 		58.3
(3)
P 		17.5
(-3)
A 		41
B 45.3
(3)
P 		17
(-1.3)
A 		35
(1.5)
A 		5.4
(-3)
A 		17.1
(-1.2)
A 		16.7
(-1.3)
A 		40
C 32.2
(-1)
A 		65.2
(3)
A 		16.1
(-3)
A 		34
(-0.8)
A 		21.8
(-2.3)
A 		16.9
(-2.9)
A 		49
avr 40.7
(3) 		38.3
(2.4) 		28.4
(-0.1) 		24.6
(-1.1) 		32.4
(0.9) 		17
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 14.9
(3)
M 		5.3
(-1.9)
A 		3.1
(-3)
A 		9.3
(0.2)
A 		12
B 17.3
(3)
P 		4.7
(-3)
A 		7.4
(-1.7)
A 		12.6
(0.8)
A 		13
C 26.6
(3)
P 		14.8
(-0.2)
P 		4.3
(-3)
A 		6.8
(-2.3)
A 		22
avr 19.6
(3) 		8.3
(-1.6) 		4.9
(-3) 		9.6
(-1.1) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 8.2
(-1.2)
A 		11.7
(0.3)
A 		7.4
(-1.6)
A 		8.7
(-1)
A 		17.6
(3)
P 		4.3
(-3)
A 		13
B 15.8
(3)
P 		5.7
(-1.2)
A 		8.5
(-0)
A 		1.4
(-3)
A 		6.9
(-0.7)
A 		6.2
(-1)
A 		14
C 11.9
(-0)
A 		19.9
(3)
A 		4.1
(-3)
A 		6.8
(-2)
A 		7.1
(-1.9)
A 		5.7
(-2.4)
A 		16
avr 12
(2.7) 		12.4
(3) 		6.7
(-1.9) 		5.6
(-2.8) 		10.5
(1.4) 		5.4
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184316_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15007
Sequence Type Exemplar sequence
Representative Public ID F15E11.4 NCBI
Target Description F15E11.4 /REP_DB=WormBase Gene ID /WP=CE17002 /TR=O44600 /GB=AAB94201.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071244(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071244 NCBI Caenorhabditis elegans F15E11.4 (F15E11.4) mRNA, complete cds. 11/11 None
SNAP00000041499 ENSEMBL cdna:SNAP chromosome:CEL140:V:2338485:2340139:-1 9/11 None
GENEFINDER00000041507 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2339395:2341186:-1 11/11 None
F15E11.4 ENSEMBL cdna:known chromosome:CEL140:V:2339395:2341186:-1 gene:F15E11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2339394-2341186(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15E11.4
Entrez Gene 184539 Entrez gene
SwissProt O44600 EMBL-EBI
WormBase CE17002 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503645 F15E11.4 [Caenorhabditis elegans] gb|AAB94201.1| Hypothetical protein F15E11.4 [Caenorhabditis elegans] 0.0
blast NP_503645 F15E11.4 [Caenorhabditis elegans] gb|AAB94201.1| Hypothetical protein F15E11.4 [Caenorhabditis elegans] 8.0E-94
blast AAK68424 Hypothetical protein Y19D10B.5 [Caenorhabditis elegans] ref|NP_503635.1| Y19D10B.5 [Caenorhabditis elegans] 4.0E-92
blast NP_503644 F15E11.3 [Caenorhabditis elegans] gb|AAB94200.1| Hypothetical protein F15E11.3 [Caenorhabditis elegans] 1.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 2.3E-4
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.3E-28
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.3E-28
Sequence
Target Sequence 
>C. ELEGANS:184316_AT
tcaacattcacaacatcacctactaatatacaagaaggatgtacgcaaatatttggaaat
ttggtgataagccctgaaaatgagcacctagtgagccagctgaagaccgtggaagtgata
tttggtggattgattctcaaaaattcaaatttgagtaaaattgattttttcgacaacctg
aagtacatttattcactagaaaaaagcatagcagcaatatcagtcgagcaaaacccaaac
ttgtcagatatttcatttcccagtttgaagcttgcaaaatcgaacgccgcttatgcaatc
attttcaacaacaacagtcaaacattgtcggctgattcaacttattgcgatcgacttcag
aatgcactcaatcagcctggggaccgacctccgatgtttgatggaaaattttgcagtgaa
cttccaaagaattccccgaggctctctattcttggatttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACATTCACAACATCACCTACTA 100 631 703 Antisense
ATGAGCACCTAGTGAGCCAGCTGAA 67 45 782 Antisense
GTCAGATATTTCATTTCCCAGTTTG 418 465 945 Antisense
GAAGCTTGCAAAATCGAACGCCGCT 184 341 969 Antisense
GAACGCCGCTTATGCAATCATTTTC 451 347 984 Antisense
GTCAAACATTGTCGGCTGATTCAAC 14 465 1019 Antisense
GATTCAACTTATTGCGATCGACTTC 94 431 1036 Antisense
CAGAATGCACTCAATCAGCCTGGGG 276 205 1060 Antisense
GACCGACCTCCGATGTTTGATGGAA 6 381 1084 Antisense
GTGAACTTCCAAAGAATTCCCCGAG 416 461 1118 Antisense
GAGGCTCTCTATTCTTGGATTTTTT 596 405 1140 Antisense
Sequence Source Affymetrix Proprietary Database