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[184315_at]

Description C13F10.1 /REP_DB=WormBase Gene ID /WP=CE08143 /TR=O01490 /GB=AAC47963.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 01      4grp_high_8_8 > 29      6grp_total > 13      4grp_total > 34      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 91.4
(-2.5)
P 		90.1
(-2.6)
P 		87.1
(-3)
A 		135.5
(3)
P 		48
B 55.1
(-3)
A 		145.7
(3)
P 		98.6
(-0.1)
P 		80
(-1.4)
P 		91
C 68.6
(-3)
P 		120.1
(2.1)
P 		95.8
(-0.3)
P 		129.7
(3)
P 		61
avr 71.7
(-3) 		118.6
(3) 		93.8
(-0.2) 		115.1
(2.6) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 87.1
(-0.3)
M 		116
(3)
P 		106.4
(1.9)
P 		88.5
(-0.2)
P 		82.9
(-0.8)
M 		63.7
(-3)
A 		52
B 132.6
(2)
P 		117.8
(1.1)
P 		148.4
(3)
P 		89.2
(-0.6)
P 		80.4
(-1.1)
P 		49.5
(-3)
P 		99
C 167.3
(3)
P 		114.4
(0)
P 		62.4
(-2.9)
A 		118.6
(0.2)
P 		85.6
(-1.6)
P 		61.4
(-3)
P 		106
avr 129
(3) 		116.1
(1.9) 		105.7
(1) 		98.8
(0.4) 		83
(-0.9) 		58.2
(-3) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 33.3
(3)
P 		19.6
(-3)
P 		22.8
(-1.6)
A 		19.8
(-2.9)
P 		14
B 17.6
(-2.8)
A 		36
(3)
P 		22.8
(-1.2)
P 		17
(-3)
P 		19
C 22.7
(-2.6)
P 		34.5
(3)
P 		33.4
(2.5)
P 		21.9
(-3)
P 		13
avr 24.5
(-0.2) 		30
(3) 		26.3
(0.9) 		19.6
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 16.1
(-2.9)
M 		41.2
(3)
P 		23.2
(-1.2)
P 		22.4
(-1.4)
P 		25
(-0.8)
M 		15.5
(-3)
A 		26
B 46.1
(3)
P 		39.2
(1.5)
P 		36
(0.8)
P 		23.6
(-1.9)
P 		32.7
(0.1)
P 		18.5
(-3)
P 		28
C 62
(3)
P 		34.9
(-0.5)
P 		15.9
(-3)
A 		23.9
(-2)
P 		27.7
(-1.5)
P 		20.5
(-2.4)
P 		46
avr 41.4
(3) 		38.4
(2.2) 		25
(-1.2) 		23.3
(-1.7) 		28.5
(-0.3) 		18.2
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184315_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12324
Sequence Type Exemplar sequence
Representative Public ID C13F10.1 NCBI
Target Description C13F10.1 /REP_DB=WormBase Gene ID /WP=CE08143 /TR=O01490 /GB=AAC47963.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072432(11), NM_072433(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072432 NCBI Caenorhabditis elegans C13F10.1a (C13F10.1) mRNA, complete cds. 11/11 None
NM_072433 NCBI Caenorhabditis elegans C13F10.1b (C13F10.1) mRNA, complete cds. 11/11 None
C13F10.1b ENSEMBL cdna:known chromosome:CEL140:V:7226671:7227508:1 gene:C13F10.1 11/11 None
C13F10.1a ENSEMBL cdna:known chromosome:CEL140:V:7226671:7227649:1 gene:C13F10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7226671-7227535(+) 100.0 100.0
Public Domain and Genome References
Ensembl C13F10.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL08026 Hypothetical protein C13F10.1a [Caenorhabditis elegans] ref|NP_504833.1| C13F10.1a [Caenorhabditis elegans] 5.0E-69
blast T28920 hypothetical protein C13F10.1 - Caenorhabditis elegans 2.0E-67
blast AAL08027 Hypothetical protein C13F10.1b [Caenorhabditis elegans] ref|NP_504834.1| C13F10.1b [Caenorhabditis elegans] 2.0E-54
blast AAL08027 Hypothetical protein C13F10.1b [Caenorhabditis elegans] ref|NP_504834.1| C13F10.1b [Caenorhabditis elegans] 3.0E-49
blast AAL08026 Hypothetical protein C13F10.1a [Caenorhabditis elegans] ref|NP_504833.1| C13F10.1a [Caenorhabditis elegans] 3.0E-49
blast T28920 hypothetical protein C13F10.1 - Caenorhabditis elegans 3.0E-49
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504833.1 1 111-133
C13F10.1a 1 111-133
Sequence
Target Sequence 
>C. ELEGANS:184315_AT
acaaatgactccaagagctccacccccatctgttatatgtccgcaaatcaatacaaaacc
tctcccaccgctttctcttttctttctcccgcgctgggtctgggcacaagatgctctcga
caaactcttctcaagcacactgcccggcttctcgctcatgatacgttctctcgtcgcgtc
gtttcgaaattcactttactttctccacgattagtgggtcgttacagagcacgccatctt
tttccaaaagtaaatctgtccaaaatgcagatcgagaaaccatacgactatgctgctctt
atgatccgtgtctccgccggatttgttattttcatatcgttatcattgatacttttggta
gttggaaatctcatctacacaagttttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAATGACTCCAAGAGCTCCACCC 655 111 34 Antisense
CCCCATCTGTTATATGTCCGCAAAT 447 261 57 Antisense
GGTCTGGGCACAAGATGCTCTCGAC 405 501 130 Antisense
TGCTCTCGACAAACTCTTCTCAAGC 417 581 145 Antisense
CTCGTCGCGTCGTTTCGAAATTCAC 162 233 203 Antisense
GAAATTCACTTTACTTTCTCCACGA 648 361 219 Antisense
AGTGGGTCGTTACAGAGCACGCCAT 510 57 246 Antisense
AGCACGCCATCTTTTTCCAAAAGTA 235 77 261 Antisense
ACTATGCTGCTCTTATGATCCGTGT 444 101 320 Antisense
TCTCCGCCGGATTTGTTATTTTCAT 212 611 344 Antisense
GAAATCTCATCTACACAAGTTTTAC 294 363 398 Antisense
Sequence Source Affymetrix Proprietary Database