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[184314_at]

Description T26C12.2 /REP_DB=WormBase Gene ID /WP=CE18286 /TR=O61857 /GB=AAC17554.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3092
1 2 3 4 range
A 63.1
(-2.9)
A 		24.7
(-3)
A 		12.7
(-3)
A 		3104.3
(3)
P 		3092
B 38.9
(-3)
A 		19.4
(-3)
A 		29.6
(-3)
A 		2796.4
(3)
P 		2777
C 87.4
(-2.9)
A 		55.1
(-3)
A 		38.4
(-3)
A 		2661.2
(3)
P 		2623
avr 63.1
(-2.9) 		33.1
(-3) 		26.9
(-3) 		2854
(3) 		2827

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2542
1 2 3 4 5 6 range
A 68.2
(-2.9)
A 		16.8
(-3)
A 		20.7
(-3)
A 		106.5
(-2.8)
A 		673.5
(-1.4)
P 		2551.3
(3)
P 		2535
B 9.3
(-3)
A 		46.5
(-2.9)
A 		20.4
(-3)
A 		62.7
(-2.9)
A 		942.7
(-0.5)
P 		2284.5
(3)
P 		2275
C 53.3
(-2.9)
A 		28.5
(-3)
A 		43.9
(-3)
A 		76.4
(-2.9)
A 		704.8
(-1.1)
P 		2185.5
(3)
P 		2157
avr 43.6
(-3) 		30.6
(-3) 		28.3
(-3) 		81.9
(-2.9) 		773.7
(-1.1) 		2340.4
(3) 		2312
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 593
1 2 3 4 range
A 23
(-2.7)
A 		5.4
(-3)
A 		3.3
(-3)
A 		454.4
(3)
P 		451
B 12.4
(-2.9)
A 		4.8
(-3)
A 		6.9
(-3)
A 		595.9
(3)
P 		591
C 28.9
(-2.8)
A 		15.8
(-3)
A 		13.4
(-3)
A 		448.7
(3)
P 		435
avr 21.4
(-2.8) 		8.7
(-3) 		7.9
(-3) 		499.7
(3) 		492

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 849
1 2 3 4 5 6 range
A 12.6
(-2.9)
A 		6
(-3)
A 		4.5
(-3)
A 		27
(-2.8)
A 		203.2
(-1.1)
P 		621.2
(3)
P 		617
B 3.2
(-3)
A 		15.5
(-2.9)
A 		4.9
(-3)
A 		16.6
(-2.9)
A 		383
(-0.3)
P 		851.9
(3)
P 		849
C 19.8
(-2.9)
A 		8.7
(-3)
A 		11.2
(-3)
A 		15.4
(-2.9)
A 		228.1
(-1.2)
P 		731.6
(3)
P 		723
avr 11.9
(-3) 		10.1
(-3) 		6.9
(-3) 		19.7
(-2.9) 		271.4
(-0.8) 		734.9
(3) 		728
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184314_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10861
Sequence Type Exemplar sequence
Representative Public ID T26C12.2 NCBI
Target Description T26C12.2 /REP_DB=WormBase Gene ID /WP=CE18286 /TR=O61857 /GB=AAC17554.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067906(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067906 NCBI Caenorhabditis elegans T26C12.2 (T26C12.2) mRNA, complete cds. 11/11 None
SNAP00000018488 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3263847:3265368:-1 11/11 None
GENEFINDER00000018492 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3263847:3265894:-1 11/11 None
T26C12.2 ENSEMBL cdna:known chromosome:CEL140:IV:3263847:3265368:-1 gene:T26C12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3263852-3265374(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26C12.2
Entrez Gene 188921 Entrez gene
SwissProt O61857 EMBL-EBI
WormBase CE18286 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500307 T26C12.2 [Caenorhabditis elegans] gb|AAC17554.1| Hypothetical protein T26C12.2 [Caenorhabditis elegans] 1.0E-107
blast CAE59895 Hypothetical protein CBG03379 [Caenorhabditis briggsae] 7.0E-49
blast CAE59895 Hypothetical protein CBG03379 [Caenorhabditis briggsae] 8.0E-49
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500307.1 3 7-29,67-89,101-123
T26C12.2 3 7-29,67-89,101-123
SNAP00000018488 3 7-29,67-89,101-123
GENEFINDER00000018492 3 28-50,93-115,127-149
Sequence
Target Sequence 
>C. ELEGANS:184314_AT
tatctttgcagcggacccggatggctaccccgacgttgagcatggatcaattgatcgttt
ggaacttggcttcaatccgttgaaccttctctgtccggtttgtgcacttgttcaaggtct
gctcggtggtgtgctaggtatttttggtggattattggggcgagggctcatcaaacaact
tggcatcatgttgtgttcaactgctgtgggagctttgattaaggttatcgttctgccaaa
tgctctttgtgcattggttgttgagctcgtcttcatgattggaaagaaagctggcaccgg
actgtgcccaatcctcatgctctgcccaatgccaaaaaataaggataagaaaactgacaa
accgacaaaaaagacaatttcatcagctgaagacgactatgaggaccgaattttggcgat
tattgagaacccggatacggcgaatttgaagccagaaatggaacaactgtacagagattt
agttgagaggcttccaattgaatcgtttaaaatggctggtgtggatgagcacgctcttca
tattactcgaaacttcgtcgccgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCTTTGCAGCGGACCCGGATGGC 394 659 108 Antisense
CTACCCCGACGTTGAGCATGGATCA 380 225 132 Antisense
GTGCACTTGTTCAAGGTCTGCTCGG 141 481 209 Antisense
TCTGCTCGGTGGTGTGCTAGGTATT 646 609 225 Antisense
GCGAGGGCTCATCAAACAACTTGGC 619 289 267 Antisense
GTTGTGTTCAACTGCTGTGGGAGCT 177 437 297 Antisense
GGTTATCGTTCTGCCAAATGCTCTT 647 505 330 Antisense
GTGCATTGGTTGTTGAGCTCGTCTT 265 481 356 Antisense
CATGCTCTGCCCAATGCCAAAAAAT 500 209 423 Antisense
TGAGCACGCTCTTCATATTACTCGA 360 569 633 Antisense
TATTACTCGAAACTTCGTCGCCGCT 490 657 648 Antisense
Sequence Source Affymetrix Proprietary Database