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[184313_s_at]

Description K11H12.4 /REP_DB=WormBase Gene ID /WP=CE12152 /TR=P91369 /GB=AAC24399.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 47      4grp_high_8_8 > 48      6grp_highest_nonorm > 80      6grp_total > 47      4grp_total > 63      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 830
1 2 3 4 range
A 687.4
(3)
P 		249.4
(-1.1)
P 		410.2
(0.4)
P 		53.3
(-3)
A 		634
B 757.6
(3)
P 		163.4
(-1.9)
P 		368.8
(-0.2)
P 		24.8
(-3)
A 		733
C 854.3
(3)
P 		194.9
(-2.4)
P 		395.5
(-0.7)
P 		119.1
(-3)
P 		735
avr 766.4
(3) 		202.6
(-1.8) 		391.5
(-0.2) 		65.7
(-3) 		701

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 295.9
(3)
P 		136.3
(-2.2)
P 		112.7
(-3)
P 		186
(-0.6)
P 		123.6
(-2.6)
P 		243
(1.3)
P 		183
B 292.8
(3)
P 		140
(-1)
P 		181.7
(0.1)
P 		109.8
(-1.8)
P 		62.6
(-3)
P 		249.1
(1.9)
P 		230
C 263.6
(3)
P 		155.8
(-1.6)
P 		144.6
(-2)
P 		138.9
(-2.3)
P 		122.1
(-3)
P 		256.5
(2.7)
P 		142
avr 284.1
(3) 		144
(-1.6) 		146.3
(-1.6) 		144.9
(-1.6) 		102.8
(-3) 		249.5
(1.9) 		181
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 278
1 2 3 4 range
A 250.3
(3)
P 		54.1
(-1.9)
P 		107.2
(-0.5)
P 		7.8
(-3)
A 		243
B 241.6
(3)
P 		40.4
(-2.1)
P 		85.5
(-1)
P 		5.3
(-3)
A 		236
C 282.8
(3)
P 		56
(-2.2)
P 		137.8
(-0.3)
P 		20.1
(-3)
P 		263
avr 258.2
(3) 		50.2
(-2.1) 		110.2
(-0.6) 		11.1
(-3) 		247

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 54.5
(2.2)
P 		48.5
(1.1)
P 		24.5
(-3)
P 		47.2
(0.9)
P 		37.3
(-0.8)
P 		59.2
(3)
P 		35
B 101.9
(3)
P 		46.6
(-1.3)
P 		44.1
(-1.5)
P 		29.1
(-2.7)
P 		25.4
(-3)
P 		92.9
(2.3)
P 		77
C 97.7
(3)
P 		47.5
(-1.3)
P 		36.8
(-2.2)
P 		27.9
(-3)
P 		39.5
(-2)
P 		85.9
(2)
P 		70
avr 84.7
(3) 		47.5
(-1.4) 		35.1
(-2.9) 		34.7
(-2.9) 		34.1
(-3) 		79.3
(2.4) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184313_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11077
Sequence Type Exemplar sequence
Representative Public ID K11H12.4 NCBI
Target Description K11H12.4 /REP_DB=WormBase Gene ID /WP=CE12152 /TR=P91369 /GB=AAC24399.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067568(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067568 NCBI Caenorhabditis elegans K11H12.4 (K11H12.4) mRNA, complete cds. 11/11 None
SNAP00000015766 ENSEMBL cdna:SNAP chromosome:CEL140:IV:674094:675873:-1 11/11 None
GENEFINDER00000015769 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:671655:675873:-1 11/11 None
K11H12.4 ENSEMBL cdna:known chromosome:CEL140:IV:674094:675883:-1 gene:K11H12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:674099-675879(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K11H12.4
Entrez Gene 176894 Entrez gene
SwissProt P91369 EMBL-EBI
WormBase CE12152 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_499969 K11H12.4 [Caenorhabditis elegans] gb|AAC24399.1| Hypothetical protein K11H12.4 [Caenorhabditis elegans] 0.0
blast NP_499968 K11H12.3 [Caenorhabditis elegans] gb|AAC24400.2| Hypothetical protein K11H12.3 [Caenorhabditis elegans] 1.0E-110
blast AAY86221 Hypothetical protein C18H7.11 [Caenorhabditis elegans] 1.0E-106
blast CAE64220 Hypothetical protein CBG08853 [Caenorhabditis briggsae] 4.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.0E-126
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.3E-70
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 4.5E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000015769 3 449-468,630-652,667-684
Sequence
Target Sequence 
>C. ELEGANS:184313_S_AT
caacatcgaaccccttcaaattggcctaaactattggtacatcacttctatgggtccctt
caatttgtttttagagaacaaatatgtgagtgatcacagttatacgaccactgccgtcaa
cacaactggcattattgtgggtaaatcgttctatgccgaccgtgtcgtcaacttccaatc
agatacttcaagatcgtctgcgtctgggtttttcgactctgcatatatcaccgatgatct
taccatcaaattgcaatttgtcggtgctagtttttcgaatactttaagaaaagaaagtga
gacacaaaactatgcctggtcccctgcagcaccggtaaatctgacagttacctcgacatc
tacgcttcctggaacattttacattcaatatttcgcatttgcgggtgatcttcaaccact
gaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACATCGAACCCCTTCAAATTGGC 213 179 654 Antisense
TCTATGGGTCCCTTCAATTTGTTTT 411 601 700 Antisense
ACCACTGCCGTCAACACAACTGGCA 531 85 760 Antisense
TAAATCGTTCTATGCCGACCGTGTC 588 627 795 Antisense
GTGTCGTCAACTTCCAATCAGATAC 196 487 815 Antisense
ACTTCAAGATCGTCTGCGTCTGGGT 478 103 838 Antisense
GACTCTGCATATATCACCGATGATC 577 373 868 Antisense
AGACACAAAACTATGCCTGGTCCCC 536 71 953 Antisense
AATCTGACAGTTACCTCGACATCTA 609 169 991 Antisense
GACATCTACGCTTCCTGGAACATTT 208 369 1008 Antisense
TGCGGGTGATCTTCAACCACTGACA 546 583 1053 Antisense
Sequence Source Affymetrix Proprietary Database