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[184312_at]

Description C04E12.5 /REP_DB=WormBase Gene ID /WP=CE16818 /TR=O76676 /GB=AAC27091.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 2.4
(-3)
A 		11.2
(-2.4)
A 		13.5
(-2.2)
A 		90.2
(3)
P 		88
B 26.4
(-2.4)
A 		69.6
(3)
P 		22
(-3)
M 		44.3
(-0.2)
P 		48
C 2.8
(-3)
A 		38.2
(1.3)
P 		14.3
(-1.6)
A 		52.1
(3)
P 		49
avr 10.5
(-3) 		39.7
(0.4) 		16.6
(-2.3) 		62.2
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 4.5
(-3)
A 		19.4
(-1.2)
A 		52.9
(3)
P 		14.8
(-1.7)
A 		25.9
(-0.3)
A 		47.6
(2.3)
P 		48
B 2.7
(-3)
A 		53.5
(3)
A 		42.6
(1.7)
A 		29.8
(0.2)
A 		21.1
(-0.8)
A 		34.1
(0.7)
P 		51
C 17.2
(-2.2)
A 		17.5
(-2.2)
A 		17.7
(-2.2)
A 		47.1
(2.3)
A 		12.2
(-3)
A 		51.8
(3)
P 		40
avr 8.1
(-3) 		30.1
(0.6) 		37.7
(1.9) 		30.6
(0.7) 		19.7
(-1.1) 		44.5
(3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 0.9
(-3)
A 		2.4
(-2.3)
A 		3.5
(-1.7)
A 		13.2
(3)
P 		12
B 8.4
(-1.4)
A 		17.2
(3)
P 		5.1
(-3)
M 		9.4
(-0.9)
P 		12
C 0.9
(-3)
A 		11
(3)
P 		5
(-0.6)
A 		8.8
(1.7)
P 		10
avr 3.4
(-3) 		10.2
(2.7) 		4.5
(-2.1) 		10.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 0.8
(-3)
A 		6.9
(0.4)
A 		11.5
(2.9)
P 		3.8
(-1.3)
A 		7.8
(0.9)
A 		11.6
(3)
P 		11
B 0.9
(-3)
A 		17.8
(3)
A 		10.3
(0.3)
A 		7.9
(-0.5)
A 		8.6
(-0.3)
A 		12.7
(1.2)
P 		17
C 6.4
(-1.9)
A 		5.3
(-2.4)
A 		4.5
(-2.7)
A 		9.5
(-0.5)
A 		3.9
(-3)
A 		17.4
(3)
P 		14
avr 2.7
(-3) 		10
(0.9) 		8.8
(0.3) 		7.1
(-0.6) 		6.8
(-0.8) 		13.9
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184312_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15009
Sequence Type Exemplar sequence
Representative Public ID C04E12.5 NCBI
Target Description C04E12.5 /REP_DB=WormBase Gene ID /WP=CE16818 /TR=O76676 /GB=AAC27091.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071534(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071534 NCBI Caenorhabditis elegans C04E12.5 (C04E12.5) mRNA, complete cds. 11/11 None
SNAP00000029748 ENSEMBL cdna:SNAP chromosome:CEL140:V:3360108:3360919:1 10/11 None
GENEFINDER00000029766 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3358469:3360919:1 11/11 None
C04E12.5 ENSEMBL cdna:known chromosome:CEL140:V:3358469:3360919:1 gene:C04E12.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071535 1/11 Cross Hyb Matching Probes A B 
GENEFINDER00000029761 1/11 Cross Hyb Matching Probes None
C04E12.4 1/11 Cross Hyb Matching Probes A B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3358468-3360919(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04E12.5
Entrez Gene 182210 Entrez gene
SwissProt O76676 EMBL-EBI
WormBase CE35221 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC27091 Hypothetical protein C04E12.5 [Caenorhabditis elegans] ref|NP_503935.2| C04E12.5 [Caenorhabditis elegans] 0.0
blast AAC27089 Hypothetical protein C04E12.4 [Caenorhabditis elegans] ref|NP_503936.2| C04E12.4 [Caenorhabditis elegans] 1.0E-161
blast AAC27089 Hypothetical protein C04E12.4 [Caenorhabditis elegans] ref|NP_503936.2| C04E12.4 [Caenorhabditis elegans] 1.0E-136
blast AAF99939 Hypothetical protein F35F10.4 [Caenorhabditis elegans] ref|NP_503911.4| F35F10.4 [Caenorhabditis elegans] 1.0E-114
blast AAC27091 Hypothetical protein C04E12.5 [Caenorhabditis elegans] ref|NP_503935.2| C04E12.5 [Caenorhabditis elegans] 1.0E-102
blast AAF99939 Hypothetical protein F35F10.4 [Caenorhabditis elegans] ref|NP_503911.4| F35F10.4 [Caenorhabditis elegans] 7.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 2.4E-46
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 2.1E-49
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 2.1E-49
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 2.4E-46
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 3.1E-44
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503935.2 1 36-58
C04E12.5 1 36-58
GENEFINDER00000029766 1 36-58
Sequence
Target Sequence 
>C. ELEGANS:184312_AT
tgaaaggtgtgagcaatgtggagagttttaaaattgaagtttactggaaaaatatgacta
tggattctccaacaacaacgacacctggaagtattgccacaacaaaatcttcaactacta
caatcacagagacacatcatcaacctgacatctcatcaacacggttgactgaacatcaag
atattatccaattgacaccaaaatcaggacaagactacgcaaagttcacgtacgatgtta
taagcaacacgtattcacaaagtaatgaagatggatctccagttaaaccatatcttgctt
ctaacgtggagcatgtagtagatagaagattgaatgtagcgtatatacatatgaaagagc
ccatcaataagcgtattggacttaagtgcacggctattccgataaacggaagcctgacca
ttgagaaaccccaatttaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAAGGTGTGAGCAATGTGGAGAG 281 571 794 Antisense
ATGACTATGGATTCTCCAACAACAA 418 45 847 Antisense
GGAAGTATTGCCACAACAAAATCTT 611 529 880 Antisense
TCAACTACTACAATCACAGAGACAC 307 631 904 Antisense
AATCACAGAGACACATCATCAACCT 356 171 915 Antisense
CCTGACATCTCATCAACACGGTTGA 645 265 937 Antisense
AACACGGTTGACTGAACATCAAGAT 511 135 951 Antisense
AAGATATTATCCAATTGACACCAAA 391 155 971 Antisense
GCGTATTGGACTTAAGTGCACGGCT 623 291 1164 Antisense
GGAAGCCTGACCATTGAGAAACCCC 642 527 1201 Antisense
GACCATTGAGAAACCCCAATTTAAT 532 377 1209 Antisense
Sequence Source Affymetrix Proprietary Database