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[184311_s_at]

Description F55C12.4 /REP_DB=WormBase Gene ID /WP=CE19468 /TR=Q20808 /GB=AAC71166.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 71      6grp_total > 71      4grp_total > 13      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 252.1
(0.6)
P 		208.2
(-2)
P 		191.2
(-3)
P 		293.9
(3)
P 		103
B 288.1
(0.2)
P 		270.7
(-0.8)
P 		229.9
(-3)
P 		339.9
(3)
P 		110
C 262.3
(-0.9)
P 		231.8
(-3)
P 		239
(-2.5)
P 		318.4
(3)
P 		87
avr 267.5
(-0.1) 		236.9
(-2) 		220
(-3) 		317.4
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 229.3
(-2.9)
P 		425.1
(2.4)
P 		319.2
(-0.5)
P 		448.4
(3)
P 		226.4
(-3)
P 		234.7
(-2.8)
P 		222
B 215
(-3)
P 		353.3
(1.4)
P 		239.6
(-2.2)
P 		349
(1.3)
P 		403.6
(3)
P 		228.8
(-2.6)
P 		189
C 294.3
(0.3)
P 		349.3
(2.8)
P 		349.5
(2.8)
P 		354.1
(3)
P 		269.2
(-0.9)
P 		221.9
(-3)
P 		132
avr 246.2
(-2.3) 		375.9
(2.7) 		302.8
(-0.1) 		383.8
(3) 		299.7
(-0.2) 		228.5
(-3) 		155
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 91.8
(3)
P 		45.2
(-2.7)
P 		50
(-2.1)
P 		43
(-3)
P 		49
B 91.9
(3)
P 		66.9
(-0.9)
P 		53.3
(-3)
P 		72.4
(-0)
P 		39
C 86.8
(3)
P 		66.7
(-0.6)
P 		83.3
(2.4)
P 		53.7
(-3)
P 		33
avr 90.2
(3) 		59.6
(-2.4) 		62.2
(-2) 		56.4
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 42.3
(-3)
P 		151.2
(3)
P 		69.5
(-1.5)
P 		113.7
(0.9)
P 		68.3
(-1.6)
P 		57.2
(-2.2)
P 		109
B 74.8
(-2.1)
P 		117.6
(0.4)
P 		58.2
(-3)
P 		92.4
(-1.1)
P 		164
(3)
P 		85.3
(-1.5)
P 		106
C 109.1
(3)
P 		106.6
(2.6)
P 		89
(-0.2)
P 		71.2
(-3)
P 		87.1
(-0.5)
P 		74.3
(-2.5)
P 		38
avr 75.4
(-2.6) 		125.1
(3) 		72.2
(-3) 		92.4
(-0.7) 		106.5
(0.9) 		72.3
(-3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184311_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5551
Sequence Type Exemplar sequence
Representative Public ID F55C12.4 NCBI
Target Description F55C12.4 /REP_DB=WormBase Gene ID /WP=CE19468 /TR=Q20808 /GB=AAC71166.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062768(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062768 NCBI Caenorhabditis elegans F55C12.4 (F55C12.4) mRNA, complete cds. 11/11 None
SNAP00000011031 ENSEMBL cdna:SNAP chromosome:CEL140:II:5857236:5858347:-1 11/11 None
GENEFINDER00000011040 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5857271:5858347:-1 11/11 None
F55C12.4 ENSEMBL cdna:known chromosome:CEL140:II:5857068:5858388:-1 gene:F55C12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5857232-5858344(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55C12.4
Entrez Gene 173995 Entrez gene
SwissProt Q20808 EMBL-EBI
WormBase CE19468 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71166 Hypothetical protein F55C12.4 [Caenorhabditis elegans] ref|NP_495169.1| F55C12.4 [Caenorhabditis elegans] 7.0E-84
blast AAC71166 Hypothetical protein F55C12.4 [Caenorhabditis elegans] ref|NP_495169.1| F55C12.4 [Caenorhabditis elegans] 5.0E-77
blast CAE59211 Hypothetical protein CBG02524 [Caenorhabditis briggsae] 3.0E-65
blast CAE59211 Hypothetical protein CBG02524 [Caenorhabditis briggsae] 6.0E-61
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495169.1 1 54-71
F55C12.4 1 54-71
SNAP00000011031 1 54-71
GENEFINDER00000011040 1 54-71
Sequence
Target Sequence 
>C. ELEGANS:184311_S_AT
gattcagatgtccccgatttagatctccgtggggcttcatccagttcttctagacggcga
aattttttcagcaaatccactgctgattatgaagagattcgtcatcgacagaaaacctac
aaaaccatattcctattcagtttcatatttattttcctattggctctctacttcctctac
aacgcaatgtgtcgactgaagctcctttcagatgaaattgatgatcttcggcagaaaatg
ggacacgtcgaggaatttcagttggagctgaaaaagattcgaatgcagtttgaagtgatt
cgggagaatgaaatggagaataatgaaataaatggaactgtgaggagttcaagtacaact
ggaatgatttatgataagctggcaaatatttccagtagatttgataatttatgggatggg
catcaaaagaattcaatgagcatggaagatgtaactgctcgaatatcccgcgttgagaat
aaatgcctggcagtatgccaacaacacgatacagtcggtggtgtctctatgccacgtggc
aga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCAGATGTCCCCGATTTAGATC 51 431 46 Antisense
GATTTAGATCTCCGTGGGGCTTCAT 324 427 61 Antisense
TCATCCAGTTCTTCTAGACGGCGAA 147 623 82 Antisense
AACCATATTCCTATTCAGTTTCATA 21 147 168 Antisense
TTATTTTCCTATTGGCTCTCTACTT 351 679 194 Antisense
TCTACTTCCTCTACAACGCAATGTG 83 615 212 Antisense
CGCAATGTGTCGACTGAAGCTCCTT 578 253 228 Antisense
GGGACACGTCGAGGAATTTCAGTTG 616 493 285 Antisense
CTGCTCGAATATCCCGCGTTGAGAA 508 237 500 Antisense
CACGATACAGTCGGTGGTGTCTCTA 287 199 550 Antisense
TGGTGTCTCTATGCCACGTGGCAGA 360 553 564 Antisense
Sequence Source Affymetrix Proprietary Database