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[184310_at]

Description K11H12.3 /REP_DB=WormBase Gene ID /WP=CE12150 /TR=P91370 /GB=AAC24400.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 12      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 18.2
(0.4)
A 		16.7
(-0)
A 		6.2
(-3)
A 		27.4
(3)
A 		21
B 3.4
(-3)
A 		9.9
(2.1)
A 		3.8
(-2.7)
A 		11.1
(3)
A 		8
C 24.2
(-1.3)
A 		10.7
(-2.7)
A 		7.5
(-3)
A 		66.1
(3)
A 		59
avr 15.3
(-1) 		12.4
(-1.6) 		5.8
(-3) 		34.9
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 29.2
(3)
A 		8.6
(-1.8)
A 		9.2
(-1.7)
A 		3.9
(-2.9)
A 		3.7
(-3)
A 		3.6
(-3)
A 		26
B 4.4
(-2.9)
A 		10.3
(-1.2)
A 		24.4
(3)
A 		21.3
(2.1)
A 		4.2
(-3)
A 		7.3
(-2.1)
A 		20
C 7
(0.3)
A 		8.8
(1.5)
A 		9.4
(1.9)
A 		5.4
(-0.8)
A 		2.2
(-3)
A 		11
(3)
A 		9
avr 13.5
(2.6) 		9.2
(0.2) 		14.3
(3) 		10.2
(0.7) 		3.4
(-3) 		7.3
(-0.9) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6.6
(3)
A 		3.6
(-0.6)
A 		1.6
(-3)
A 		4
(-0.1)
A 		5
B 1.1
(-2.2)
A 		2.4
(3)
A 		0.9
(-3)
A 		2.4
(3)
A 		2
C 8
(0.8)
A 		3.1
(-2.6)
A 		2.6
(-3)
A 		11.1
(3)
A 		9
avr 5.2
(2.1) 		3
(-1.1) 		1.7
(-3) 		5.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 5.4
(3)
A 		3.1
(-0.1)
A 		2
(-1.5)
A 		1
(-2.9)
A 		1.1
(-2.7)
A 		0.9
(-3)
A 		5
B 1.5
(-3)
A 		3.4
(-0.4)
A 		5.9
(3)
A 		5.6
(2.6)
A 		1.7
(-2.7)
A 		2.7
(-1.4)
A 		4
C 2.6
(0.8)
A 		2.7
(1)
A 		2.4
(0.4)
A 		1.1
(-2.2)
A 		0.7
(-3)
A 		3.7
(3)
A 		3
avr 3.2
(2.5) 		3.1
(2.2) 		3.4
(3) 		2.6
(0.8) 		1.2
(-3) 		2.4
(0.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184310_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10905
Sequence Type Exemplar sequence
Representative Public ID K11H12.3 NCBI
Target Description K11H12.3 /REP_DB=WormBase Gene ID /WP=CE12150 /TR=P91370 /GB=AAC24400.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067567(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067567 NCBI Caenorhabditis elegans K11H12.3 (K11H12.3) mRNA, complete cds. 10/11 None
GENEFINDER00000015769 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:671655:675873:-1 9/11 None
K11H12.3 ENSEMBL cdna:known chromosome:CEL140:IV:671634:673480:-1 gene:K11H12.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015765 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:671608-673486(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K11H12.3
Entrez Gene 187311 Entrez gene
SwissProt P91370 EMBL-EBI
WormBase CE29518 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_499969 K11H12.4 [Caenorhabditis elegans] gb|AAC24399.1| Hypothetical protein K11H12.4 [Caenorhabditis elegans] 0.0
blast NP_499968 K11H12.3 [Caenorhabditis elegans] gb|AAC24400.2| Hypothetical protein K11H12.3 [Caenorhabditis elegans] 1.0E-115
blast NP_499968 K11H12.3 [Caenorhabditis elegans] gb|AAC24400.2| Hypothetical protein K11H12.3 [Caenorhabditis elegans] 1.0E-110
blast AAY86221 Hypothetical protein C18H7.11 [Caenorhabditis elegans] 1.0E-106
blast NP_499969 K11H12.4 [Caenorhabditis elegans] gb|AAC24399.1| Hypothetical protein K11H12.4 [Caenorhabditis elegans] 1.0E-68
blast AAY86221 Hypothetical protein C18H7.11 [Caenorhabditis elegans] 2.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.3E-70
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.0E-126
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.3E-70
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 4.5E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499968.1 1 180-202
K11H12.3 1 180-202
GENEFINDER00000015769 3 449-468,630-652,667-684
Sequence
Target Sequence 
>C. ELEGANS:184310_AT
acatagagcccctccaaattggcctcaactattggtacatcacttctatgggacctttta
atatgtatctagtaaacaagtatgtcagtgatcacaattataccacgacttcagtgaata
caactggccttattgtgaatagaaggctctattcgaaacatgttgtcaacttcaaatccg
atacaaccagatcctcagcatgtgggcttttttattccgcgtacttcaccagtgcgctca
gtatcaatatgcagtatcaaggcgggagtttctccgattatttaaaccaaaaaaatgtga
ctcaaaacttgaactggtcaccggcggcaccggcaagcctgacagtcagcgcaaattcgt
cactccctggaactttttatattcaatattttgcgtttgttggagatgtatcagcaactt
ctgtcgcaacaagaatgatgtcccagacgtcgatgactact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATAGAGCCCCTCCAAATTGGCCT 614 97 641 Antisense
GATCACAATTATACCACGACTTCAG 487 421 730 Antisense
CAACCAGATCCTCAGCATGTGGGCT 225 185 824 Antisense
CATGTGGGCTTTTTTATTCCGCGTA 30 209 839 Antisense
TCACCAGTGCGCTCAGTATCAATAT 688 625 866 Antisense
GCAGTATCAAGGCGGGAGTTTCTCC 648 309 891 Antisense
CAAAACTTGAACTGGTCACCGGCGG 677 127 943 Antisense
GACAGTCAGCGCAAATTCGTCACTC 372 369 981 Antisense
TTCGTCACTCCCTGGAACTTTTTAT 248 649 996 Antisense
TATCAGCAACTTCTGTCGCAACAAG 250 659 1049 Antisense
GATGTCCCAGACGTCGATGACTACT 180 407 1077 Antisense
Sequence Source Affymetrix Proprietary Database