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[184309_at]

Description R05C11.2 /REP_DB=WormBase Gene ID /WP=CE21089 /TR=Q9TYQ1 /GB=AAD12805.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 5.9
(3)
A 		5
(1.3)
A 		2.8
(-3)
A 		3
(-2.6)
A 		3
B 4.6
(1.5)
A 		1.9
(-3)
A 		2.5
(-2)
A 		5.5
(3)
A 		4
C 5
(-2.5)
A 		3.8
(-3)
A 		19.5
(3)
A 		6.4
(-2)
A 		16
avr 5.2
(-1) 		3.6
(-3) 		8.3
(3) 		5
(-1.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 11.5
(2.4)
A 		2
(-2.5)
A 		6.5
(-0.2)
A 		1
(-3)
A 		1.8
(-2.6)
A 		12.7
(3)
A 		12
B 2
(-2.7)
A 		12.9
(1.2)
A 		18
(3)
A 		5.3
(-1.5)
A 		1.2
(-3)
A 		4.3
(-1.9)
A 		17
C 4.1
(-2.1)
A 		6.4
(-0.7)
A 		12.4
(3)
A 		5
(-1.5)
A 		2.6
(-3)
A 		11.4
(2.4)
A 		10
avr 5.9
(-0.7) 		7.1
(-0) 		12.3
(3) 		3.8
(-1.9) 		1.9
(-3) 		9.5
(1.4) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.2
(3)
A 		1.1
(-0.7)
A 		0.7
(-2)
A 		0.4
(-3)
A 		2
B 1.5
(3)
A 		0.5
(-3)
A 		0.6
(-2.4)
A 		1.2
(1.2)
A 		1
C 1.6
(-2.5)
A 		1.1
(-3)
A 		6.8
(3)
A 		1.1
(-3)
A 		6
avr 1.8
(0) 		0.9
(-3) 		2.7
(3) 		0.9
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 2.1
(0.9)
A 		0.7
(-2.1)
A 		1.4
(-0.6)
A 		0.3
(-3)
A 		0.5
(-2.6)
A 		3.1
(3)
A 		3
B 0.7
(-2.7)
A 		4.3
(2.8)
A 		4.4
(3)
A 		1.4
(-1.6)
A 		0.5
(-3)
A 		1.6
(-1.3)
A 		4
C 1.5
(-1.6)
A 		1.9
(-0.8)
A 		3.1
(1.6)
A 		1
(-2.6)
A 		0.8
(-3)
A 		3.8
(3)
A 		3
avr 1.4
(-1) 		2.3
(1.3) 		3
(3) 		0.9
(-2.3) 		0.6
(-3) 		2.8
(2.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184309_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10567
Sequence Type Exemplar sequence
Representative Public ID R05C11.2 NCBI
Target Description R05C11.2 /REP_DB=WormBase Gene ID /WP=CE21089 /TR=Q9TYQ1 /GB=AAD12805.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067758(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067758 NCBI Caenorhabditis elegans R05C11.2 (R05C11.2) mRNA, complete cds. 11/11 None
SNAP00000026665 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2057877:2058828:-1 11/11 None
R05C11.2 ENSEMBL cdna:known chromosome:CEL140:IV:2057877:2059110:-1 gene:R05C11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000026671 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2057882-2059116(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R05C11.2
Entrez Gene 187600 Entrez gene
SwissProt Q9TYQ1 EMBL-EBI
WormBase CE21089 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500159 R05C11.2 [Caenorhabditis elegans] gb|AAD12805.1| Hypothetical protein R05C11.2 [Caenorhabditis elegans] 0.0
blast NP_500159 R05C11.2 [Caenorhabditis elegans] gb|AAD12805.1| Hypothetical protein R05C11.2 [Caenorhabditis elegans] 1.0E-170
blast AAT48620 Hypothetical protein F42G2.4a [Caenorhabditis elegans] ref|NP_494270.3| F42G2.4a [Caenorhabditis elegans] 1.0E-71
blast T32285 hypothetical protein F42G2.4 - Caenorhabditis elegans 1.0E-71
blast AAT48620 Hypothetical protein F42G2.4a [Caenorhabditis elegans] ref|NP_494270.3| F42G2.4a [Caenorhabditis elegans] 2.0E-57
blast T32285 hypothetical protein F42G2.4 - Caenorhabditis elegans 2.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.8E-36
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.8E-36
Sequence
Target Sequence 
>C. ELEGANS:184309_AT
cgctgggtcgattgctgccagtggaaaagttggttgtcacaacaagaaaccaaaaaacca
tagtgcaactgctccaatccgtggatccctctaagctgaacaaaattgagtttggaacat
ctttcgacgtacctgcaagtgatgtatggagcattgaagagtttttggtcatggaacaat
ggaggaatgcgaaagagttgacaattattaagcgtgttatcaagtgtgatgttgaaaatc
ttgttcacttcagaaaagttgacataattttggattcgttatcattgaaaaatgttatat
atttgagagatatgttcctagtttcaccggactttctccagttcaaggtcacatttgtga
acagtgacgtaaataattctatatttcaagaaggatttttgggaattccgtttcgcatag
ttaccgattctacaaataatcaacctagcatttggtttttcaattgcatgaacgacacag
atgatctacaaattcgatattatcaaaatcttaaaaaattcatgtttaatcgtattccga
gggaatctagtccggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTGGGTCGATTGCTGCCAGTGGA 673 255 563 Antisense
AACCATAGTGCAACTGCTCCAATCC 119 147 618 Antisense
GTGGATCCCTCTAAGCTGAACAAAA 620 489 643 Antisense
GAGTTTGGAACATCTTTCGACGTAC 294 399 670 Antisense
ATCTTTCGACGTACCTGCAAGTGAT 254 31 681 Antisense
ATATGTTCCTAGTTTCACCGGACTT 211 21 872 Antisense
GGACTTTCTCCAGTTCAAGGTCACA 344 521 891 Antisense
GATTTTTGGGAATTCCGTTTCGCAT 285 429 956 Antisense
GTTTCGCATAGTTACCGATTCTACA 283 451 972 Antisense
AATTCATGTTTAATCGTATTCCGAG 273 177 1079 Antisense
GTATTCCGAGGGAATCTAGTCCGGC 635 449 1094 Antisense
Sequence Source Affymetrix Proprietary Database