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[184307_at]

Description Y49F6C.5 /REP_DB=WormBase Gene ID /WP=CE22269 /TR=Q9TYJ2 /GB=AAD12862.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 26      6grp_cgc > 95      6grp_cgc_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.6
(-3)
A 		2.8
(-1)
A 		2.4
(-1.7)
A 		5.2
(3)
A 		4
B 3.2
(0)
A 		3.2
(0)
A 		2.7
(-3)
A 		3.7
(3)
A 		1
C 2.4
(-3)
A 		4.3
(3)
A 		2.9
(-1.4)
A 		2.4
(-3)
A 		2
avr 2.4
(-3) 		3.4
(1.3) 		2.7
(-1.7) 		3.8
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 4.2
(3)
A 		2.2
(-1.6)
A 		1.6
(-3)
A 		1.9
(-2.3)
A 		2.5
(-0.9)
A 		2.6
(-0.7)
A 		3
B 2.7
(-0.4)
A 		1.8
(-2.1)
A 		2.6
(-0.6)
A 		4.5
(3)
A 		1.5
(-2.6)
A 		1.3
(-3)
A 		3
C 1.2
(-3)
A 		2.5
(0.1)
A 		1.8
(-1.6)
A 		3.7
(3)
A 		2.9
(1.1)
A 		2.4
(-0.1)
A 		3
avr 2.7
(0) 		2.2
(-2.1) 		2
(-3) 		3.4
(3) 		2.3
(-1.7) 		2.1
(-2.6) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.6
(-3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		0.8
(3)
A 		0
B 1
(3)
A 		0.8
(0)
A 		0.6
(-3)
A 		0.8
(0)
A 		0
C 0.8
(0)
A 		1.2
(3)
A 		1
(1.5)
A 		0.4
(-3)
A 		1
avr 0.8
(0) 		0.9
(3) 		0.7
(-3) 		0.7
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.8
(3)
A 		0.8
(3)
A 		0.3
(-3)
A 		0.5
(-0.6)
A 		0.7
(1.8)
A 		0.6
(0.6)
A 		1
B 0.9
(0.4)
A 		0.6
(-2.1)
A 		0.6
(-2.1)
A 		1.2
(3)
A 		0.6
(-2.1)
A 		0.5
(-3)
A 		1
C 0.4
(-3)
A 		0.7
(-0)
A 		0.4
(-3)
A 		0.7
(-0)
A 		1
(3)
A 		0.8
(1)
A 		1
avr 0.7
(1.5) 		0.7
(1.5) 		0.4
(-3) 		0.8
(3) 		0.8
(3) 		0.6
(-0) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184307_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5043
Sequence Type Exemplar sequence
Representative Public ID Y49F6C.5 NCBI
Target Description Y49F6C.5 /REP_DB=WormBase Gene ID /WP=CE22269 /TR=Q9TYJ2 /GB=AAD12862.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062121(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062121 NCBI Caenorhabditis elegans Y49F6C.5 (Y49F6C.5) mRNA, complete cds. 11/11 None
GENEFINDER00000037284 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3370527:3372521:1 9/11 None
Y49F6C.5 ENSEMBL cdna:known chromosome:CEL140:II:3371305:3372140:1 gene:Y49F6C.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037274 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3371303-3372139(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-23
Ensembl Y49F6C.5
Entrez Gene 190086 Entrez gene
SwissProt Q9TYJ2 EMBL-EBI
WormBase CE22269 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD12862 Hypothetical protein Y49F6C.5 [Caenorhabditis elegans] ref|NP_494522.1| Y49F6C.5 [Caenorhabditis elegans] 1.0E-139
blast AAD12862 Hypothetical protein Y49F6C.5 [Caenorhabditis elegans] ref|NP_494522.1| Y49F6C.5 [Caenorhabditis elegans] 1.0E-105
blast AAD12865 Hypothetical protein Y49F6C.3 [Caenorhabditis elegans] ref|NP_494524.1| Y49F6C.3 [Caenorhabditis elegans] 4.0E-58
blast AAD12865 Hypothetical protein Y49F6C.3 [Caenorhabditis elegans] ref|NP_494524.1| Y49F6C.3 [Caenorhabditis elegans] 8.0E-58
blast AAB94974 Hypothetical protein F52C6.8 [Caenorhabditis elegans] ref|NP_494122.1| F52C6.8 [Caenorhabditis elegans] 7.0E-57
blast AAB94974 Hypothetical protein F52C6.8 [Caenorhabditis elegans] ref|NP_494122.1| F52C6.8 [Caenorhabditis elegans] 2.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 1.7E-14
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.8E-31
Pfam IPR002083 EMBL-EBI MATH 4.9E-14
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.8E-31
Sequence
Target Sequence 
>C. ELEGANS:184307_AT
gccccctatgggctattcaatatgaagactcccagtggtaaacgcgtcacgtttaatact
agccactgttttgaaagtacaaatgaaattaacgggtatggttggaagatgagttgggag
acaatgaaaaaggactatctagtcgatgatagtttatttgtcaaagcaactgtcaagatt
acaaaaatgattggaatacctagaaagaagctgaagagctttgatgagtcagttgaagag
ttttccgatgtgattcttgcagttgaagatgaaaagttttatgttctcaagaagttccta
gcttctcactcttcatacttcaaatctcttttctttggaagcttcgcggaagctgaaaaa
tcagaaattacactttccgagatcaactctgcaggttttcagtgccttctggaggttcta
tacggagaatctgctattgatgacgagaacgtcgacggaatcctgcatttggctcacatg
aacgaaatggcttttgtgattcggaaatgcgaagagtgtttgctcgacaaatcggacaga
cccagtaggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCCCTATGGGCTATTCAATATGA 350 285 121 Antisense
AGACTCCCAGTGGTAAACGCGTCAC 27 71 146 Antisense
GCGTCACGTTTAATACTAGCCACTG 667 291 164 Antisense
TCAAGAAGTTCCTAGCTTCTCACTC 8 633 407 Antisense
ATCTCTTTTCTTTGGAAGCTTCGCG 594 21 444 Antisense
ACACTTTCCGAGATCAACTCTGCAG 704 109 490 Antisense
AACTCTGCAGGTTTTCAGTGCCTTC 180 141 505 Antisense
TCAGTGCCTTCTGGAGGTTCTATAC 325 623 519 Antisense
TGACGAGAACGTCGACGGAATCCTG 617 569 561 Antisense
AATCCTGCATTTGGCTCACATGAAC 583 167 579 Antisense
GACAAATCGGACAGACCCAGTAGGT 636 363 646 Antisense
Sequence Source Affymetrix Proprietary Database