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[184306_at]

Description Y51H4A.15 /REP_DB=WormBase Gene ID /WP=CE22340 /TR=Q9NAD8 /GB=CAB61147.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 93      6grp_total > 86      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1834
1 2 3 4 range
A 458.3
(-2.9)
P 		427.6
(-3)
P 		435.8
(-3)
P 		2198.8
(3)
P 		1771
B 461.9
(-2.9)
P 		432.8
(-3)
P 		538.7
(-2.6)
P 		2133.2
(3)
P 		1700
C 532.1
(-2.4)
P 		364.5
(-3)
P 		580.2
(-2.2)
P 		2056.2
(3)
P 		1692
avr 484.1
(-2.7) 		408.3
(-3) 		518.2
(-2.6) 		2129.4
(3) 		1721

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 398
1 2 3 4 5 6 range
A 243.9
(-3)
P 		292.2
(-1.8)
P 		393.6
(0.7)
P 		403
(0.9)
P 		354.3
(-0.3)
P 		485.6
(3)
P 		242
B 332
(-3)
P 		353.4
(-2.6)
P 		361.3
(-2.4)
P 		438.3
(-0.9)
P 		516
(0.6)
P 		642.2
(3)
P 		310
C 255.9
(-3)
P 		356.5
(-1.4)
P 		310.9
(-2.1)
P 		305.4
(-2.2)
P 		410.3
(-0.6)
P 		641.1
(3)
P 		385
avr 277.3
(-3) 		334
(-1.9) 		355.3
(-1.5) 		382.2
(-1) 		426.9
(-0.1) 		589.6
(3) 		312
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 362
1 2 3 4 range
A 166.9
(-1.1)
P 		92.8
(-3)
P 		113.9
(-2.4)
P 		321.9
(3)
P 		229
B 147.3
(-2.3)
P 		106.9
(-3)
P 		124.8
(-2.7)
P 		454.6
(3)
P 		348
C 176.1
(-1.2)
P 		104.8
(-3)
P 		202.2
(-0.6)
P 		346.7
(3)
P 		242
avr 163.4
(-1.6) 		101.5
(-3) 		147
(-2) 		374.4
(3) 		273

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 45
(-3)
P 		103.9
(1.8)
P 		85.7
(0.3)
P 		102.2
(1.7)
P 		106.9
(2.1)
P 		118.2
(3)
P 		73
B 115.5
(-1.9)
P 		117.6
(-1.8)
P 		87.7
(-3)
P 		116.1
(-1.9)
P 		209.6
(1.8)
P 		239.5
(3)
P 		152
C 94.9
(-1.7)
P 		108.8
(-1.1)
P 		79.1
(-2.3)
P 		61.4
(-3)
P 		132.8
(-0.2)
P 		214.6
(3)
P 		153
avr 85.1
(-2.9) 		110.1
(-1.5) 		84.2
(-3) 		93.2
(-2.5) 		149.8
(0.7) 		190.8
(3) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184306_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10080
Sequence Type Exemplar sequence
Representative Public ID Y51H4A.15 NCBI
Target Description Y51H4A.15 /REP_DB=WormBase Gene ID /WP=CE22340 /TR=Q9NAD8 /GB=CAB61147.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070571(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070571 NCBI Caenorhabditis elegans Y51H4A.15 (Y51H4A.15) mRNA, complete cds. 11/11 None
SNAP00000000189 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16649602:16657162:1 10/11 None
GENEFINDER00000000205 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16656578:16657162:1 9/11 None
Y51H4A.15 ENSEMBL cdna:known chromosome:CEL140:IV:16656374:16657162:1 gene:Y51H4A.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16656379-16657168(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H4A.15
Entrez Gene 178464 Entrez gene
SwissProt Q9NAD8 EMBL-EBI
WormBase CE22340 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB61147 Hypothetical protein Y51H4A.15 [Caenorhabditis elegans] ref|NP_502972.1| Y51H4A.15 [Caenorhabditis elegans] 1.0E-106
blast CAB61147 Hypothetical protein Y51H4A.15 [Caenorhabditis elegans] ref|NP_502972.1| Y51H4A.15 [Caenorhabditis elegans] 8.0E-76
blast CAB61147 Hypothetical protein Y51H4A.15 [Caenorhabditis elegans] ref|NP_502972.1| Y51H4A.15 [Caenorhabditis elegans] 9.0E-71
blast CAE68051 Hypothetical protein CBG13670 [Caenorhabditis briggsae] 2.0E-68
blast CAE68051 Hypothetical protein CBG13670 [Caenorhabditis briggsae] 1.0E-64
Sequence
Target Sequence 
>C. ELEGANS:184306_AT
tgcacaccgtagtctcagcatttttacagtattttcttcaaaaaaaaacctcagttttct
atttatattgtgtaaatattgtgttttacaggtaaatatgagcataaatgccgacgttct
ccgcaatttcacgggaagaacactcaaatcttggagcggttatcaattggcactggacaa
ctcgtgtggcggagatgagacccgcgagaaggacaagtggtttctggaggtgctctgcga
gcaattgacaacgacacgcggtctgaaagctgaagaactcgaggagtggctcacaaatat
cctgtatcacgatttcgacctgattttggacgacgattcgagttatcaaatcgcattttt
cctattagaaggcttcggttatattaaaaacgagaatgaggccgggattcagcagctgct
ttcaaaactcccttccgacgaagaattagaaaaagcgaaacgagaatcagtgcgcggacc
tgaaaacgacgaagatgacgaagaaatggacattccagaggacgaagaggaatcagaaga
aggcccatcagagccacgtggtccccagcgacaagttgttgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCACACCGTAGTCTCAGCATTTTT 654 577 69 Antisense
GACGTTCTCCGCAATTTCACGGGAA 124 375 181 Antisense
GAGCGGTTATCAATTGGCACTGGAC 71 387 222 Antisense
GCACTGGACAACTCGTGTGGCGGAG 710 313 238 Antisense
ACAAGTGGTTTCTGGAGGTGCTCTG 177 111 281 Antisense
GCAATTGACAACGACACGCGGTCTG 35 323 309 Antisense
ATATCCTGTATCACGATTTCGACCT 347 21 365 Antisense
TTCAGCAGCTGCTTTCAAAACTCCC 588 685 476 Antisense
GAAACGAGAATCAGTGCGCGGACCT 658 357 525 Antisense
GAAGAAGGCCCATCAGAGCCACGTG 514 339 604 Antisense
TGGTCCCCAGCGACAAGTTGTTGTA 37 553 627 Antisense
Sequence Source Affymetrix Proprietary Database