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[184305_at]

Description C41D11.4 /REP_DB=WormBase Gene ID /WP=CE08661 /TR=O01973 /GB=AAC48139.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 37      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_total > 17      4grp_total > 21      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 200.5
(2.5)
P 		110.1
(-3)
P 		143
(-1)
P 		208.8
(3)
P 		99
B 160.8
(-0.1)
P 		153.2
(-0.8)
P 		130.1
(-3)
P 		193.3
(3)
P 		63
C 176.5
(2.1)
P 		169.7
(1.8)
P 		83.4
(-3)
P 		192.2
(3)
P 		109
avr 179.3
(1.6) 		144.3
(-1.1) 		118.8
(-3) 		198.1
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 128
(-1.1)
P 		161.5
(3)
P 		112.9
(-3)
P 		130.7
(-0.8)
P 		137.9
(0.1)
P 		149.7
(1.5)
P 		49
B 146.1
(3)
P 		98.3
(-3)
P 		112
(-1.3)
A 		101.4
(-2.6)
A 		98.9
(-2.9)
P 		144.9
(2.8)
P 		48
C 164.4
(3)
P 		86.6
(-3)
P 		150.9
(2)
P 		111.2
(-1.1)
P 		116.4
(-0.7)
A 		106.9
(-1.4)
P 		78
avr 146.2
(3) 		115.5
(-2.8) 		125.3
(-0.9) 		114.4
(-3) 		117.7
(-2.4) 		133.8
(0.7) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 73
(3)
P 		23.9
(-3)
P 		37.4
(-1.4)
P 		30.6
(-2.2)
P 		49
B 51.3
(3)
P 		37.8
(-0.8)
P 		30.2
(-3)
P 		41.2
(0.1)
P 		21
C 58.4
(3)
P 		48.8
(1)
P 		29.1
(-3)
P 		32.4
(-2.3)
P 		29
avr 60.9
(3) 		36.8
(-2) 		32.2
(-3) 		34.7
(-2.5) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 23.6
(-3)
P 		57.4
(3)
P 		24.6
(-2.8)
P 		33.2
(-1.3)
P 		41.6
(0.2)
P 		36.4
(-0.7)
P 		34
B 50.8
(2.3)
P 		32.7
(-1.7)
P 		27.2
(-2.9)
A 		26.9
(-3)
A 		40.2
(-0.1)
P 		54
(3)
P 		27
C 60.9
(3)
P 		26.4
(-2.4)
P 		38.4
(-0.5)
P 		22.4
(-3)
P 		37.7
(-0.6)
A 		35.8
(-0.9)
P 		39
avr 45.1
(3) 		38.8
(0.9) 		30.1
(-2.1) 		27.5
(-3) 		39.8
(1.2) 		42.1
(2) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184305_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1862
Sequence Type Exemplar sequence
Representative Public ID C41D11.4 NCBI
Target Description C41D11.4 /REP_DB=WormBase Gene ID /WP=CE08661 /TR=O01973 /GB=AAC48139.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058968(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058968 NCBI Caenorhabditis elegans C41D11.4 (C41D11.4) mRNA, complete cds. 11/11 None
SNAP00000002066 ENSEMBL cdna:SNAP chromosome:CEL140:I:4439087:4444343:-1 11/11 None
GENEFINDER00000002076 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4442479:4444343:-1 9/11 None
C41D11.4 ENSEMBL cdna:known chromosome:CEL140:I:4441647:4444106:-1 gene:C41D11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002075 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4441646-4443958(-) 97.99 100.0
Public Domain and Genome References
Gene Title
Ensembl C41D11.4
Entrez Gene 172043 Entrez gene
SwissProt Q8T3G4 EMBL-EBI
WormBase CE32827 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM15562 Hypothetical protein C41D11.4 [Caenorhabditis elegans] ref|NP_491369.3| C41D11.4 [Caenorhabditis elegans] 1.0E-155
blast AAM15562 Hypothetical protein C41D11.4 [Caenorhabditis elegans] ref|NP_491369.3| C41D11.4 [Caenorhabditis elegans] 1.0E-148
blast AAM15562 Hypothetical protein C41D11.4 [Caenorhabditis elegans] ref|NP_491369.3| C41D11.4 [Caenorhabditis elegans] 1.0E-107
blast CAE60402 Hypothetical protein CBG04004 [Caenorhabditis briggsae] 4.0E-43
blast CAE60402 Hypothetical protein CBG04004 [Caenorhabditis briggsae] 4.0E-40
blast CAE60402 Hypothetical protein CBG04004 [Caenorhabditis briggsae] 4.0E-26
Sequence
Target Sequence 
>C. ELEGANS:184305_AT
aagatccgggtcaatgccacgattagaggcccagtcccttgatgttccaatacgaatgga
aattggaaatagcttaactcctgtgttaaagaggaagagaacatcttcattaacgtgtct
cttttcatccgacatgccaccaattttaactccacaacgtttacgtccacgtggcatttc
tgagacccgtaccatcgatgatgacgtgttcgttccaaaatcacctacgaaaaagccaat
aacttcgccaatcaaaaaacgagttcgtcaagattcggaaaatcgttcgacaagtcccct
caaaaaacgatatatctcgtcgttttcgattcggctcgaagaggaaaaggaaattgaaaa
agcagtaccaactcccacaatgtcaaccccgatgcggaagttcaaatcaacgatatttaa
tccaagggctgtcactgaacgaatcgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGATCCGGGTCAATGCCACGATTA 466 155 312 Antisense
ATGCCACGATTAGAGGCCCAGTCCC 373 39 325 Antisense
CCAGTCCCTTGATGTTCCAATACGA 602 271 342 Antisense
CATTAACGTGTCTCTTTTCATCCGA 525 215 419 Antisense
CCGACATGCCACCAATTTTAACTCC 366 263 440 Antisense
CCACAACGTTTACGTCCACGTGGCA 619 265 463 Antisense
TTCTGAGACCCGTACCATCGATGAT 44 693 489 Antisense
GACGTGTTCGTTCCAAAATCACCTA 486 377 514 Antisense
TATCTCGTCGTTTTCGATTCGGCTC 192 653 624 Antisense
ATGTCAACCCCGATGCGGAAGTTCA 254 41 691 Antisense
AAGGGCTGTCACTGAACGAATCGCT 674 159 735 Antisense
Sequence Source Affymetrix Proprietary Database