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[184303_at]

Description Y51H4A.23 /REP_DB=WormBase Gene ID /WP=CE25366 /TR=Q9U259 /GB=CAB63386.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 53      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 16.1
(2.2)
A 		18
(3)
A 		8.6
(-1.1)
A 		4.4
(-3)
A 		14
B 11
(3)
A 		7.4
(-3)
A 		9.5
(0.5)
A 		9.9
(1.2)
A 		4
C 8
(3)
A 		5.4
(-1.9)
A 		8
(3)
A 		4.8
(-3)
A 		3
avr 11.7
(3) 		10.3
(1.4) 		8.7
(-0.4) 		6.4
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 2.2
(-3)
A 		15.5
(3)
A 		9.4
(0.2)
A 		14.3
(2.5)
A 		6.9
(-0.9)
A 		6
(-1.3)
A 		13
B 24.8
(0.4)
A 		6.9
(-2.4)
A 		6
(-2.5)
A 		41.4
(3)
A 		26
(0.6)
A 		3
(-3)
A 		38
C 2.8
(-3)
A 		12.5
(-0.4)
A 		24.9
(3)
A 		8.8
(-1.4)
A 		6.6
(-2)
A 		6.3
(-2)
A 		22
avr 9.9
(-1.2) 		11.6
(-0.6) 		13.4
(0) 		21.5
(3) 		13.2
(-0) 		5.1
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 5.9
(3)
A 		3.9
(0.7)
A 		2.3
(-1.1)
A 		0.6
(-3)
A 		5
B 3.5
(3)
A 		1.8
(-3)
A 		2.2
(-1.6)
A 		2.1
(-1.9)
A 		2
C 2.6
(2.4)
A 		1.6
(-0.6)
A 		2.8
(3)
A 		0.8
(-3)
A 		2
avr 4
(3) 		2.4
(-0.4) 		2.4
(-0.4) 		1.2
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.4
(-3)
A 		5.5
(3)
A 		2.1
(-1)
A 		3.6
(0.8)
A 		2.1
(-1)
A 		1.5
(-1.7)
A 		5
B 8.6
(1.5)
A 		2.3
(-2.3)
A 		1.5
(-2.8)
A 		11
(3)
A 		10.6
(2.8)
A 		1.1
(-3)
A 		10
C 1
(-3)
A 		3.8
(0.2)
A 		6.3
(3)
A 		1.8
(-2.1)
A 		2.2
(-1.6)
A 		2.1
(-1.8)
A 		5
avr 3.3
(-0.4) 		3.9
(0.5) 		3.3
(-0.4) 		5.5
(3) 		5
(2.2) 		1.6
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184303_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10011
Sequence Type Exemplar sequence
Representative Public ID Y51H4A.23 NCBI
Target Description Y51H4A.23 /REP_DB=WormBase Gene ID /WP=CE25366 /TR=Q9U259 /GB=CAB63386.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070579(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070579 NCBI Caenorhabditis elegans Y51H4A.23 (Y51H4A.23) mRNA, complete cds. 11/11 None
SNAP00000000197 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16722875:16723851:1 11/11 None
GENEFINDER00000000200 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16722875:16736511:1 11/11 None
Y51H4A.23 ENSEMBL cdna:known chromosome:CEL140:IV:16722875:16723851:1 gene:Y51H4A.23 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16722880-16723857(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H4A.23
Entrez Gene 190158 Entrez gene
SwissProt Q9U259 EMBL-EBI
WormBase CE25366 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast H88671 protein F28E10.3 [imported] - Caenorhabditis elegans 1.0E-166
blast NP_498529 C06E8.4 [Caenorhabditis elegans] 1.0E-165
blast C87861 protein F43G9.7 [imported] - Caenorhabditis elegans 1.0E-165
blast CAB63386 Hypothetical protein Y51H4A.23 [Caenorhabditis elegans] ref|NP_502980.1| Y51H4A.23 [Caenorhabditis elegans] 1.0E-153
blast NP_001023366 T08B6.9 [Caenorhabditis elegans] gb|AAO91700.1| Hypothetical protein T08B6.9 [Caenorhabditis elegans] 4.0E-55
blast CAB63352 Hypothetical protein Y41C4A.1 [Caenorhabditis elegans] ref|NP_499507.2| Y41C4A.1 [Caenorhabditis elegans] 1.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 1.6E-37
Sequence
Target Sequence 
>C. ELEGANS:184303_AT
gagtttatgtgcaatcccttcatcaagtatatggacgaatctctgatctcaattcgagat
gtggcaactgagaagttcttgtcaactatgcgggaccagcaaccgcccgtctcgtggtgg
tcaactgtagagtttgtgaaacagtttcagaaggatgagaaaatggaagctcaaatttgc
gcggtacccaagccacctccggattatacattggctggtgagcttattctcttcaaccta
ggacggcactttaagcttgatcttgaacaatacgaggtagattatactgatattcctctg
ccagcaacagaaagcacgtacttcaaaataaagaccattgcgaagggttacagtccagcg
tatcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTTATGTGCAATCCCTTCATCA 630 397 256 Antisense
AGTATATGGACGAATCTCTGATCTC 462 61 281 Antisense
GTCAACTATGCGGGACCAGCAACCG 464 463 336 Antisense
CCGTCTCGTGGTGGTCAACTGTAGA 50 265 362 Antisense
GGAAGCTCAAATTTGCGCGGTACCC 238 531 420 Antisense
AAGCCACCTCCGGATTATACATTGG 73 149 445 Antisense
CATTGGCTGGTGAGCTTATTCTCTT 531 217 464 Antisense
ATTCTCTTCAACCTAGGACGGCACT 143 3 481 Antisense
GGACGGCACTTTAAGCTTGATCTTG 702 523 496 Antisense
TATACTGATATTCCTCTGCCAGCAA 615 659 538 Antisense
GAAGGGTTACAGTCCAGCGTATCGT 572 333 597 Antisense
Sequence Source Affymetrix Proprietary Database