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[184302_s_at]

Description Y73F8A.12 /REP_DB=WormBase Gene ID /WP=CE25590 /TR=Q9NA37 /GB=CAB70228.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 02      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 5.3
(-3)
A 		36.7
(2.2)
A 		15.6
(-1.3)
A 		41.5
(3)
A 		36
B 37.7
(3)
A 		4.9
(-2.4)
A 		3.8
(-2.6)
A 		1.1
(-3)
A 		37
C 2.8
(-3)
A 		2.7
(-3)
A 		29
(0.2)
A 		51.5
(3)
A 		49
avr 15.3
(-2.8) 		14.8
(-3) 		16.1
(-2.5) 		31.4
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 4.5
(-2.7)
A 		0.8
(-3)
A 		28.3
(-1.1)
A 		6.7
(-2.6)
A 		57.6
(0.9)
A 		89.3
(3)
A 		89
B 1.3
(-3)
A 		12.7
(-1.4)
A 		2.5
(-2.8)
A 		2.9
(-2.8)
A 		44.9
(3)
A 		41.5
(2.5)
A 		44
C 1.1
(-3)
A 		16.9
(-1.8)
A 		17.9
(-1.7)
A 		4.1
(-2.8)
A 		79.8
(3)
P 		51.5
(0.8)
A 		79
avr 2.3
(-3) 		10.1
(-2.2) 		16.2
(-1.6) 		4.6
(-2.8) 		60.8
(3) 		60.8
(3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.9
(-3)
A 		8
(3)
A 		4.1
(-0.8)
A 		6.1
(1.1)
A 		6
B 12
(3)
A 		1.2
(-2.5)
A 		0.9
(-2.6)
A 		0.2
(-3)
A 		12
C 0.9
(-2.9)
A 		0.8
(-3)
A 		10.1
(3)
A 		8.7
(2.1)
A 		9
avr 4.9
(2.6) 		3.3
(-3) 		5
(3) 		5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 0.8
(-2.9)
A 		0.3
(-3)
A 		6.2
(-1.3)
A 		1.7
(-2.6)
A 		17.4
(1.8)
A 		21.7
(3)
A 		21
B 0.5
(-3)
A 		4.2
(-1.7)
A 		0.6
(-3)
A 		0.8
(-2.9)
A 		18.2
(3)
A 		15.5
(2.1)
A 		18
C 0.4
(-3)
A 		5.2
(-1.9)
A 		4.5
(-2)
A 		0.8
(-2.9)
A 		25.8
(3)
P 		17.2
(1)
A 		25
avr 0.6
(-3) 		3.2
(-2.2) 		3.8
(-2) 		1.1
(-2.8) 		20.5
(3) 		18.1
(2.3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184302_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9937
Sequence Type Exemplar sequence
Representative Public ID Y73F8A.12 NCBI
Target Description Y73F8A.12 /REP_DB=WormBase Gene ID /WP=CE25590 /TR=Q9NA37 /GB=CAB70228.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070448(11), NM_070446(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070448 NCBI Caenorhabditis elegans Y73F8A.14 (Y73F8A.14) mRNA, complete cds. 11/11 None
NM_070446 NCBI Caenorhabditis elegans Y73F8A.12 (Y73F8A.12) mRNA, complete cds. 11/11 None
SNAP00000030814 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15311196:15311638:-1 11/11 None
GENEFINDER00000030903 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15310873:15311551:-1 10/11 None
GENEFINDER00000030913 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15318556:15318911:-1 10/11 None
Y73F8A.12 ENSEMBL cdna:known chromosome:CEL140:IV:15311196:15311638:-1 gene:Y73F8A.12 11/11 None
Y73F8A.14 ENSEMBL cdna:known chromosome:CEL140:IV:15318556:15318998:-1 gene:Y73F8A.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030816 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15311201-15311644(-) 100.0 100.0
chrIV:15318561-15319004(-) 98.72 98.72
Public Domain and Genome References
Gene Title

Ensembl Y73F8A.12
Y73F8A.14
Entrez Gene 178428 Entrez gene
190676 Entrez gene
SwissProt Q9NA37 EMBL-EBI
Q9NA36 EMBL-EBI
WormBase CE25590 Wormbase
CE25591 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB70228 Hypothetical protein Y73F8A.12 [Caenorhabditis elegans] ref|NP_502847.1| Y73F8A.12 [Caenorhabditis elegans] 1.0E-71
blast CAB70229 Hypothetical protein Y73F8A.14 [Caenorhabditis elegans] ref|NP_502849.1| Y73F8A.14 [Caenorhabditis elegans] 1.0E-70
blast CAB70228 Hypothetical protein Y73F8A.12 [Caenorhabditis elegans] ref|NP_502847.1| Y73F8A.12 [Caenorhabditis elegans] 3.0E-68
blast CAB70229 Hypothetical protein Y73F8A.14 [Caenorhabditis elegans] ref|NP_502849.1| Y73F8A.14 [Caenorhabditis elegans] 3.0E-68
Sequence
Target Sequence 
>C. ELEGANS:184302_S_AT
cgttgagtcaattttccaaggcttcaaacgaaattgtcaaggatttcattgagaaaatgg
aaaaagcagctggatccggcgataaagtcaagttttctgactgttttacggaggattttc
agttttttgcatgcagttttactgcgaataaagcccagtttgttgaaaaacatctgacca
atccgaatcccgagccagtgattccaaaatattcgaatttcgatgaaaatgattcaaaaa
tcaaattcactgtttcgcgtcgtgttggacctgaagtcaatattgtggatttcgatcttc
ttcgtgagaacgacggtccatggagact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTTGAGTCAATTTTCCAAGGCTTC 14 249 44 Antisense
GAAAAAGCAGCTGGATCCGGCGATA 620 355 103 Antisense
GATCCGGCGATAAAGTCAAGTTTTC 444 415 116 Antisense
GTTTTCTGACTGTTTTACGGAGGAT 398 447 135 Antisense
AGTTTTTTGCATGCAGTTTTACTGC 610 61 164 Antisense
AAAACATCTGACCAATCCGAATCCC 220 129 210 Antisense
TCCGAATCCCGAGCCAGTGATTCCA 308 593 225 Antisense
AATCAAATTCACTGTTTCGCGTCGT 306 137 282 Antisense
TTCGCGTCGTGTTGGACCTGAAGTC 237 669 297 Antisense
ATTGTGGATTTCGATCTTCTTCGTG 272 5 325 Antisense
GTGAGAACGACGGTCCATGGAGACT 603 481 347 Antisense
Sequence Source Affymetrix Proprietary Database