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[184301_at]

Description T24C12.1 /REP_DB=WormBase Gene ID /WP=CE05001 /TR=Q22722 /GB=AAA82389.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 5.1
(-3)
A 		16.8
(-1.6)
A 		10.8
(-2.3)
A 		53.9
(3)
A 		49
B 17
(-2.9)
A 		30.2
(-1.3)
A 		16.4
(-3)
A 		65.9
(3)
A 		50
C 19.5
(-2)
A 		16.9
(-2.2)
A 		6.8
(-3)
A 		86.3
(3)
A 		80
avr 13.9
(-2.7) 		21.3
(-2) 		11.3
(-3) 		68.7
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 33
(1)
A 		9.2
(-3)
A 		22.5
(-0.8)
A 		26.7
(-0.1)
A 		24.3
(-0.5)
A 		45
(3)
A 		36
B 7
(-3)
A 		75.8
(1.3)
A 		46.9
(-0.5)
A 		20.9
(-2.1)
A 		42.5
(-0.8)
A 		102
(3)
A 		95
C 9.7
(-3)
A 		40.9
(1.4)
A 		17.3
(-1.9)
A 		14.3
(-2.4)
A 		33.8
(0.4)
A 		52.6
(3)
A 		43
avr 16.6
(-3) 		42
(0.1) 		28.9
(-1.5) 		20.6
(-2.5) 		33.5
(-1) 		66.5
(3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.9
(-3)
A 		3.7
(-1.2)
A 		2.8
(-2.1)
A 		7.9
(3)
A 		6
B 5.4
(-2.1)
A 		7.4
(-0.9)
A 		3.8
(-3)
A 		14
(3)
A 		10
C 6.5
(-1)
A 		4.9
(-1.8)
A 		2.4
(-3)
A 		14.6
(3)
A 		12
avr 4.6
(-2) 		5.3
(-1.5) 		3
(-3) 		12.2
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 6.1
(-0.8)
A 		3.3
(-3)
A 		4.9
(-1.8)
A 		6.8
(-0.3)
A 		7.3
(0.1)
A 		11
(3)
A 		8
B 2.4
(-3)
A 		25.2
(0.8)
A 		11.4
(-1.5)
A 		5.5
(-2.5)
A 		17.3
(-0.5)
A 		38
(3)
A 		36
C 3.6
(-2.7)
A 		12.5
(0.9)
A 		4.4
(-2.4)
A 		2.9
(-3)
A 		10.9
(0.3)
A 		17.6
(3)
A 		15
avr 4
(-3) 		13.7
(0.2) 		6.9
(-2) 		5.1
(-2.6) 		11.8
(-0.4) 		22.2
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184301_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18597
Sequence Type Exemplar sequence
Representative Public ID T24C12.1 NCBI
Target Description T24C12.1 /REP_DB=WormBase Gene ID /WP=CE05001 /TR=Q22722 /GB=AAA82389.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076005(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076005 NCBI Caenorhabditis elegans T24C12.1 (T24C12.1) mRNA, complete cds. 11/11 None
GENEFINDER00000041021 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2199454:2201146:1 11/11 None
SNAP00000041015 ENSEMBL cdna:SNAP chromosome:CEL140:X:2199493:2201146:1 11/11 None
T24C12.1 ENSEMBL cdna:known chromosome:CEL140:X:2199138:2201146:1 gene:T24C12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2199137-2201146(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24C12.1
Entrez Gene 188847 Entrez gene
SwissProt Q22722 EMBL-EBI
WormBase CE05001 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82389 Hypothetical protein T24C12.1 [Caenorhabditis elegans] ref|NP_508406.1| T24C12.1 [Caenorhabditis elegans] 0.0
blast AAA82389 Hypothetical protein T24C12.1 [Caenorhabditis elegans] ref|NP_508406.1| T24C12.1 [Caenorhabditis elegans] 1.0E-178
blast AAA82389 Hypothetical protein T24C12.1 [Caenorhabditis elegans] ref|NP_508406.1| T24C12.1 [Caenorhabditis elegans] 1.0E-169
blast CAE68341 Hypothetical protein CBG14067 [Caenorhabditis briggsae] 1.0E-143
blast CAE68341 Hypothetical protein CBG14067 [Caenorhabditis briggsae] 1.0E-136
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508406.1 3 80-102,117-139,146-168
T24C12.1 3 80-102,117-139,146-168
GENEFINDER00000041021 3 13-32,47-69,76-98
SNAP00000041015 3 2-24,34-56,63-85
Sequence
Target Sequence 
>C. ELEGANS:184301_AT
tcgctatattcccacattcaagtacttcacaatagcagtaaagaactatgctctgtctgg
gataacgtctatcagactttgatttgctgcccacccgaagaagtgttacaaacatgtgca
gattttctaaacgttacaaaatcgttttgcccaactggacattccaatgactgctatatt
catctcaagagatggctccattccaatacagaaatagtcggatgtcttgctttttgtgtg
atcacgccgctgaagttgttcatgatcgcagctcttcgaaaagatatcgagaaagttgaa
acagaaatggcggaacttgaatactactctcagatgattaatgaatatgaccgccatgga
gatggttacatcgagagcttcaagagcaatatcaacttggctgacagcacgtcaacccaa
acatcaggaatcagccgcgttaaaagtttcccaggatattcacctttcttgaagcactct
gtaatcgaggaggtggagaacgaatttacggtccgtggggatgaaattcgggaagagcta
caacaagcgattgctgctcataatgcacgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCTATATTCCCACATTCAAGTAC 215 601 544 Antisense
ATGCTCTGTCTGGGATAACGTCTAT 398 43 591 Antisense
TGCTGCCCACCCGAAGAAGTGTTAC 72 583 628 Antisense
ATCGTTTTGCCCAACTGGACATTCC 604 31 684 Antisense
GAGATGGCTCCATTCCAATACAGAA 654 395 732 Antisense
GTCGGATGTCTTGCTTTTTGTGTGA 246 473 760 Antisense
TGATCACGCCGCTGAAGTTGTTCAT 410 555 782 Antisense
AAGTTGTTCATGATCGCAGCTCTTC 45 157 796 Antisense
TTGGCTGACAGCACGTCAACCCAAA 494 705 940 Antisense
GTTTCCCAGGATATTCACCTTTCTT 377 447 989 Antisense
GCGATTGCTGCTCATAATGCACGAC 102 291 1090 Antisense
Sequence Source Affymetrix Proprietary Database