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[184300_s_at]

Description Y51H4A.12 /REP_DB=WormBase Gene ID /WP=CE25361 /TR=Q9U263 /GB=CAB63382.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 10.8
(-3)
A 		47.2
(3)
A 		39.9
(1.8)
A 		14.8
(-2.3)
A 		36
B 40.9
(3)
A 		15
(-1.3)
A 		5.1
(-3)
A 		23.9
(0.2)
A 		36
C 13.7
(-3)
A 		17.9
(-2.5)
A 		29.4
(-1)
A 		60.1
(3)
A 		46
avr 21.8
(-3) 		26.7
(-0.4) 		24.8
(-1.4) 		32.9
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 25.5
(0.5)
A 		4.1
(-3)
A 		29.9
(1.2)
A 		6.7
(-2.6)
A 		28.5
(1)
A 		40.6
(3)
A 		37
B 71.2
(1.8)
A 		26.6
(-1.6)
A 		9.1
(-3)
A 		37.3
(-0.8)
A 		50.9
(0.2)
A 		86.3
(3)
A 		77
C 14.3
(-1.9)
A 		39.1
(0.9)
A 		9.7
(-2.5)
A 		5.2
(-3)
A 		55.1
(2.8)
A 		57
(3)
A 		52
avr 37
(-0.2) 		23.3
(-2.1) 		16.2
(-3) 		16.4
(-3) 		44.8
(0.8) 		61.3
(3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.9
(-1.8)
A 		10.2
(2.9)
A 		10.4
(3)
A 		2.2
(-3)
A 		8
B 13
(3)
A 		3.7
(-1.7)
A 		1.2
(-3)
A 		5.1
(-1)
A 		12
C 4.5
(-3)
A 		5.2
(-2.3)
A 		10.3
(3)
A 		10.1
(2.8)
A 		6
avr 7.1
(2.2) 		6.4
(-0.6) 		7.3
(3) 		5.8
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 4.7
(-0.7)
A 		1.5
(-3)
A 		6.5
(0.6)
A 		1.7
(-2.9)
A 		8.6
(2.1)
A 		9.9
(3)
A 		8
B 24.8
(1.5)
A 		8.8
(-1.7)
A 		2.2
(-3)
A 		9.9
(-1.5)
A 		20.7
(0.7)
A 		32.2
(3)
A 		30
C 5.3
(-1.6)
A 		11.9
(0.6)
A 		2.5
(-2.5)
A 		1.1
(-3)
A 		17.8
(2.6)
A 		19.1
(3)
A 		18
avr 11.6
(-0.2) 		7.4
(-1.7) 		3.7
(-3) 		4.2
(-2.8) 		15.7
(1.3) 		20.4
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184300_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9878
Sequence Type Exemplar sequence
Representative Public ID Y51H4A.12 NCBI
Target Description Y51H4A.12 /REP_DB=WormBase Gene ID /WP=CE25361 /TR=Q9U263 /GB=CAB63382.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070570(11), NM_068138(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070570 NCBI Caenorhabditis elegans Y51H4A.12 (Y51H4A.12) mRNA, complete cds. 11/11 None
NM_068138 NCBI Caenorhabditis elegans F15E6.1 (F15E6.1) mRNA, complete cds. 11/11 None
SNAP00000000188 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16647212:16655792:-1 10/11 None
GENEFINDER00000000212 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16646668:16655792:-1 10/11 None
SNAP00000035371 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4307939:4316444:1 10/11 None
GENEFINDER00000035381 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4307939:4317049:1 10/11 None
F15E6.1 ENSEMBL cdna:known chromosome:CEL140:IV:4307752:4317225:1 gene:F15E6.1 11/11 None
Y51H4A.12 ENSEMBL cdna:known chromosome:CEL140:IV:16647084:16655792:-1 gene:Y51H4A.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075680 6/11 Cross Hyb Matching Probes None
GENEFINDER00000022359 6/11 Cross Hyb Matching Probes None
SNAP00000022297 5/11 Cross Hyb Matching Probes None
Y73B3A.1 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4307944-4316612(+) 94.15 96.68
chrIV:16647089-16655798(-) 97.79 100.0
Public Domain and Genome References
Gene Title

Ensembl F15E6.1
Y51H4A.12
Entrez Gene 177196 Entrez gene
178463 Entrez gene
SwissProt O44498 EMBL-EBI
Q9U263 EMBL-EBI
WormBase CE16990 Wormbase
CE25361 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB63382 Hypothetical protein Y51H4A.12 [Caenorhabditis elegans] ref|NP_502971.1| Y51H4A.12 [Caenorhabditis elegans] 0.0
blast NP_500539 F15E6.1 [Caenorhabditis elegans] gb|AAB92063.1| Hypothetical protein F15E6.1 [Caenorhabditis elegans] 0.0
blast CAE68050 Hypothetical protein CBG13669 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 1.5E-16
Pfam IPR001214 EMBL-EBI Nuclear protein SET 3.8E-23
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 1.5E-16
Pfam IPR001214 EMBL-EBI Nuclear protein SET 6.5E-23
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 1.5E-16
Pfam IPR001214 EMBL-EBI Nuclear protein SET 6.5E-23
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 1.5E-16
Pfam IPR001214 EMBL-EBI Nuclear protein SET 3.8E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000035381 1 1643-1665
Sequence
Target Sequence 
>C. ELEGANS:184300_S_AT
gagaagcgtctgaatcatcgtcgaaagagtcgtcggtggcgcccgaggagaagaagaatc
cgaagaagatcacgtttgccgagtacaatagtcgtagatcacagaagcgtgaagctggcg
agtgctcgacaccgcccgcagtgactcgacgtggatttattccgagtacggaaggcgagg
atttggtgaatgttgagctctcggcgatcccactcgacgatcatccctcatcatccaaca
cggcccccaccacgacaattgctccatccgtcggtggtgctccaaaacccacaagcgtcg
tcgtcaaatctccgagcacacgttctcgaactcgcggagccgctagcgaaagtgtcgacg
atgctccagctgagcacagtatgtcgcttcaggaccgagttttttcaatgttcggatcga
cagttgatgctccagctccaccaccaccaccaccagcgagtgctgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAGCGTCTGAATCATCGTCGAA 134 393 4445 Antisense
CGTCGAAAGAGTCGTCGGTGGCGCC 239 245 4463 Antisense
AGCGTGAAGCTGGCGAGTGCTCGAC 606 81 4550 Antisense
AGTGACTCGACGTGGATTTATTCCG 132 55 4584 Antisense
GTGAATGTTGAGCTCTCGGCGATCC 15 477 4630 Antisense
TCGGTGGTGCTCCAAAACCCACAAG 493 605 4715 Antisense
ATCTCCGAGCACACGTTCTCGAACT 161 33 4752 Antisense
GCTCCAGCTGAGCACAGTATGTCGC 58 299 4807 Antisense
GTATGTCGCTTCAGGACCGAGTTTT 117 455 4823 Antisense
GGATCGACAGTTGATGCTCCAGCTC 572 511 4858 Antisense
CCACCACCACCAGCGAGTGCTGAAA 675 273 4888 Antisense
Sequence Source Affymetrix Proprietary Database