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[184299_at]

Description C41D11.1 /REP_DB=WormBase Gene ID /WP=CE08658 /TR=O01977 /GB=AAC48136.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 75      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 91      6grp_total > 65      4grp_total > 23      6grp_highest_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 324.5
(3)
P 		148.4
(-2.3)
P 		126.5
(-3)
P 		305.9
(2.4)
P 		198
B 249.9
(3)
P 		193.4
(-0.7)
P 		157.4
(-3)
P 		241.3
(2.4)
P 		93
C 356.5
(3)
P 		122.1
(-3)
P 		194.7
(-1.1)
P 		302
(1.6)
P 		234
avr 310.3
(3) 		154.6
(-3) 		159.5
(-2.8) 		283.1
(2) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 307
1 2 3 4 5 6 range
A 209.1
(-1)
P 		209.9
(-0.9)
P 		312.5
(2.6)
P 		323.6
(3)
P 		150.1
(-3)
P 		309.7
(2.5)
P 		174
B 224.9
(-2.1)
P 		218.8
(-2.3)
P 		261
(-1.1)
P 		294.8
(-0.1)
P 		192.8
(-3)
P 		406
(3)
P 		213
C 133
(-3)
P 		250.3
(-0.7)
P 		230.1
(-1.1)
P 		246.9
(-0.8)
P 		162.1
(-2.4)
P 		440.1
(3)
P 		307
avr 189
(-2.4) 		226.3
(-1.4) 		267.9
(-0.2) 		288.4
(0.3) 		168.3
(-3) 		385.3
(3) 		217
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 118.2
(3)
P 		32.2
(-3)
P 		33.1
(-2.9)
P 		44.8
(-2.1)
P 		86
B 79.7
(3)
P 		47.8
(-1.4)
P 		36.5
(-3)
P 		51.4
(-0.9)
P 		43
C 118
(3)
P 		35.1
(-3)
P 		67.9
(-0.6)
P 		50.9
(-1.9)
P 		83
avr 105.3
(3) 		38.4
(-3) 		45.8
(-2.3) 		49
(-2) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 38.5
(-3)
P 		74.7
(2)
P 		68.1
(1.1)
P 		82.1
(3)
P 		45.3
(-2.1)
P 		75.4
(2.1)
P 		44
B 78.3
(-2)
P 		72.8
(-2.4)
P 		63.4
(-3)
P 		78.1
(-2)
P 		78.3
(-2)
P 		151.4
(3)
P 		88
C 49.3
(-3)
P 		76.4
(-1.3)
P 		58.6
(-2.4)
P 		49.7
(-3)
P 		52.4
(-2.8)
P 		147.3
(3)
P 		98
avr 55.4
(-3) 		74.6
(-1.3) 		63.4
(-2.3) 		70
(-1.7) 		58.7
(-2.7) 		124.7
(3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184299_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2286
Sequence Type Exemplar sequence
Representative Public ID C41D11.1 NCBI
Target Description C41D11.1 /REP_DB=WormBase Gene ID /WP=CE08658 /TR=O01977 /GB=AAC48136.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058974(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058974 NCBI Caenorhabditis elegans C41D11.1 (C41D11.1) mRNA, complete cds. 11/11 None
SNAP00000002068 ENSEMBL cdna:SNAP chromosome:CEL140:I:4444731:4459186:1 11/11 None
GENEFINDER00000002077 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4457392:4458672:1 11/11 None
C41D11.1 ENSEMBL cdna:known chromosome:CEL140:I:4457384:4458672:1 gene:C41D11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4457391-4458672(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C41D11.1
Entrez Gene 172050 Entrez gene
SwissProt O01977 EMBL-EBI
WormBase CE08658 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48136 Hypothetical protein C41D11.1 [Caenorhabditis elegans] ref|NP_491375.1| C41D11.1 [Caenorhabditis elegans] 0.0
blast AAC48137 Eukaryotic initiation factor protein 3.H [Caenorhabditis elegans] ref|NP_491370.1| Eukaryotic Initiation Factor family member (eif-3.H) [Caenorhabditis elegans] 0.0
blast CAE60401 Hypothetical protein CBG04003 [Caenorhabditis briggsae] 0.0
blast CAE60397 Hypothetical protein CBG03999 [Caenorhabditis briggsae] 2.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR000555 EMBL-EBI Peptidase M67, Mov34 4.0E-32
Sequence
Target Sequence 
>C. ELEGANS:184299_AT
gatacccgttcaattgtgacgccgggaaagaaatacaactttatcactttcgaggtcaaa
cagaatgaaaacaatagttttgatattgaaattgttggtggagaagttcagggaaaagaa
aagaattctgaagagccatctgccaaggaaaaaataattcaaaaaatggaacaagttcat
gaagtgatgaaagtagagtatgagtacaataaaaatgaagaaaccgcgaattgggatgta
atcggacatttgaaactcatcaaattttatgacaaagatctcacatctgggcttcgtcct
gtactacggcttatggataatagacacgttgcgttgttcaagaagcagagagaaaccatg
ccaatcaagatgatcaaagtgattgaagtagacggaatttggaaggatgatgttaatttc
gtaccgcaagaaggtacacttcttcctacagatcatgatgaaaaaaccgtcgtcctattg
ggaaatgattaccgtcataaattcgaacgtttgttcaaacgtgaagacgtgttcagattg
gaatccaataatacgcttacgcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACCCGTTCAATTGTGACGCCGG 236 423 376 Antisense
ACTTTATCACTTTCGAGGTCAAACA 29 101 413 Antisense
AATTCTGAAGAGCCATCTGCCAAGG 672 175 499 Antisense
GTAATCGGACATTTGAAACTCATCA 172 461 613 Antisense
AAAGATCTCACATCTGGGCTTCGTC 506 121 649 Antisense
CTTCGTCCTGTACTACGGCTTATGG 202 217 667 Antisense
GACACGTTGCGTTGTTCAAGAAGCA 645 367 698 Antisense
GATGATGTTAATTTCGTACCGCAAG 480 411 781 Antisense
GTACACTTCTTCCTACAGATCATGA 40 461 809 Antisense
GATGAAAAAACCGTCGTCCTATTGG 491 405 832 Antisense
GAATCCAATAATACGCTTACGCATC 446 329 916 Antisense
Sequence Source Affymetrix Proprietary Database