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[184298_at]

Description Y59A8B.19 /REP_DB=WormBase Gene ID /WP=CE26209 /TR=Q9GRY4 /GB=CAC14415.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 322
1 2 3 4 range
A 30.3
(-3)
A 		118.5
(-1.2)
P 		65.3
(-2.3)
A 		327.3
(3)
P 		297
B 36.5
(-2.3)
A 		84.7
(-1.2)
A 		4.9
(-3)
A 		267.2
(3)
P 		262
C 53.4
(-2.9)
A 		92.7
(-1.9)
A 		49.8
(-3)
A 		279.4
(3)
P 		230
avr 40.1
(-3) 		98.6
(-1.6) 		40
(-3) 		291.3
(3) 		251

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 65.5
(-0.6)
A 		25.8
(-2.6)
A 		17.8
(-3)
A 		22
(-2.8)
A 		81
(0.1)
M 		139.3
(3)
A 		122
B 31.5
(-1.9)
A 		6.2
(-3)
A 		30.2
(-2)
A 		29.5
(-2)
A 		88.4
(0.6)
P 		144.7
(3)
P 		139
C 9.8
(-3)
A 		43
(-1.1)
A 		37.2
(-1.4)
A 		55.9
(-0.3)
A 		63
(0.1)
A 		112.9
(3)
P 		103
avr 35.6
(-2.4) 		25
(-3) 		28.4
(-2.8) 		35.8
(-2.4) 		77.5
(-0.1) 		132.3
(3) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 11
(-3)
A 		25.7
(-0.6)
P 		17.1
(-2)
A 		47.9
(3)
P 		37
B 11.6
(-1.9)
A 		20.9
(-0.9)
A 		1.1
(-3)
A 		56.9
(3)
P 		56
C 17.7
(-2.9)
A 		26.6
(-1.1)
A 		17.4
(-3)
A 		47.1
(3)
P 		30
avr 13.4
(-2.8) 		24.4
(-1.1) 		11.9
(-3) 		50.6
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 12.1
(-1.4)
A 		9.2
(-1.9)
A 		3.9
(-3)
A 		5.6
(-2.7)
A 		24.4
(1.1)
M 		33.9
(3)
A 		30
B 11
(-2)
A 		2.1
(-3)
A 		7.3
(-2.4)
A 		7.8
(-2.3)
A 		35.9
(0.9)
P 		54
(3)
P 		52
C 3.6
(-3)
A 		13.1
(-1.3)
A 		9.5
(-2)
A 		11.2
(-1.7)
A 		20.4
(-0.1)
A 		37.8
(3)
P 		34
avr 8.9
(-2.7) 		8.1
(-2.8) 		6.9
(-3) 		8.2
(-2.8) 		26.9
(0.4) 		41.9
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184298_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14338
Sequence Type Exemplar sequence
Representative Public ID Y59A8B.19 NCBI
Target Description Y59A8B.19 /REP_DB=WormBase Gene ID /WP=CE26209 /TR=Q9GRY4 /GB=CAC14415.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075120(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075120 NCBI Caenorhabditis elegans Y59A8B.19 (Y59A8B.19) mRNA, complete cds. 11/11 A 
Y59A8B.19 ENSEMBL cdna:known chromosome:CEL140:V:18009804:18013242:1 gene:Y59A8B.19 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028695 9/11 Negative Strand Matching Probes None
SNAP00000028696 11/11 Negative Strand Matching Probes None
GENEFINDER00000028716 11/11 Negative Strand Matching Probes None
GENEFINDER00000028732 9/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18009803-18013242(+) 97.19 100.0
Public Domain and Genome References
Gene Title
Ensembl Y59A8B.19
Entrez Gene 180178 Entrez gene
SwissProt Q9GRY4 EMBL-EBI
WormBase CE26209 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6418 tRNA aminoacylation for protein translation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4812 tRNA ligase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC14415 Hypothetical protein Y59A8B.19 [Caenorhabditis elegans] ref|NP_507521.1| Y59A8B.19 [Caenorhabditis elegans] 2.0E-15
Sequence
Target Sequence 
>C. ELEGANS:184298_AT
gaactgcagggacatttggaatcgcaccagcaacttgtccaacatttccagtaattcctc
cgagacctccggtggctcctcctgcagctcctccaagaatgccagatagacccccaagac
ctcctgttgctcctcccagagcgttagtaagacctccgacggttccagttaatcctccga
gagctccggtggctcctcctgtggctcctccaagaatgccagatagacccccaagacctc
ctgttgctccttccagagcgttagtaagacctccgacggttccagttaatcctccgagag
ctccggtggctcctcctgtggctcctccaagaatgccagatagacccccaagacctcctg
ttgctcctcccagagcgttagtaagacctccgacggttccagttaatcctccgagagctc
cggtggctcctcctgtggctcctccaagacctccagtaagatctccaactgttcctgtta
ctccgtccactactccggtgactgctccaagacttcctgtggctcctccagcaactcctc
caactgaggaagccaatgatgtcacaagttcaagcacggttgccaaaagcccagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTGCAGGGACATTTGGAATCGC 581 347 557 Antisense
TTGGAATCGCACCAGCAACTTGTCC 222 709 572 Antisense
CCAGCAACTTGTCCAACATTTCCAG 212 273 583 Antisense
TCCAACATTTCCAGTAATTCCTCCG 544 587 594 Antisense
TGCAGCTCCTCCAAGAATGCCAGAT 593 577 639 Antisense
TCCAGAGCGTTAGTAAGACCTCCGA 271 587 808 Antisense
TCCAAGACCTCCAGTAAGATCTCCA 459 587 999 Antisense
TAAGATCTCCAACTGTTCCTGTTAC 531 637 1013 Antisense
TCCAGCAACTCCTCCAACTGAGGAA 102 591 1083 Antisense
GTCACAAGTTCAAGCACGGTTGCCA 229 465 1117 Antisense
CAAGCACGGTTGCCAAAAGCCCAGT 604 185 1127 Antisense
Sequence Source Affymetrix Proprietary Database