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[184297_at]

Description Y32B12B.5 /REP_DB=WormBase Gene ID /WP=CE19065 /TR=Q9XX33 /GB=CAA21007.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 42      6grp_cgc > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 2.8
(-3)
A 		45.3
(3)
A 		30.2
(0.9)
A 		8
(-2.3)
A 		43
B 2.5
(-3)
A 		8.2
(3)
A 		2.8
(-2.7)
A 		8
(2.8)
A 		6
C 4.1
(-2.2)
A 		16.6
(3)
A 		2.2
(-3)
A 		6.5
(-1.2)
A 		14
avr 3.1
(-3) 		23.4
(3) 		11.7
(-0.5) 		7.5
(-1.7) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 5.9
(-2.3)
A 		2.9
(-2.8)
A 		5.8
(-2.3)
A 		1.5
(-3)
A 		40.8
(3)
A 		3.2
(-2.7)
A 		39
B 16.6
(1.2)
A 		6
(-2.1)
A 		13.5
(0.2)
A 		22.5
(3)
A 		3.1
(-3)
A 		3
(-3)
A 		20
C 6.4
(-2.2)
A 		36.9
(3)
A 		5
(-2.4)
A 		11.8
(-1.3)
A 		1.5
(-3)
A 		4.8
(-2.4)
A 		35
avr 9.6
(0.1) 		15.3
(3) 		8.1
(-0.7) 		11.9
(1.2) 		15.1
(2.9) 		3.7
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1
(-3)
A 		9.8
(3)
A 		7.9
(1.7)
A 		1.2
(-2.9)
A 		9
B 0.8
(-2.5)
A 		2
(3)
A 		0.7
(-3)
A 		1.7
(1.6)
A 		1
C 1.4
(-2.1)
A 		4.8
(3)
A 		0.8
(-3)
A 		1.1
(-2.6)
A 		4
avr 1.1
(-3) 		5.5
(3) 		3.1
(-0.3) 		1.3
(-2.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.1
(-2.6)
A 		1
(-2.7)
A 		1.3
(-2.5)
A 		0.4
(-3)
A 		12.3
(3)
A 		0.8
(-2.8)
A 		12
B 5.8
(2.8)
A 		2
(-1.9)
A 		3.3
(-0.3)
A 		6
(3)
A 		1.3
(-2.8)
A 		1.1
(-3)
A 		5
C 2.4
(-1.9)
A 		11.3
(3)
A 		1.3
(-2.6)
A 		2.4
(-1.9)
A 		0.5
(-3)
A 		1.6
(-2.4)
A 		11
avr 3.1
(0.2) 		4.8
(3) 		2
(-1.7) 		2.9
(-0.2) 		4.7
(2.8) 		1.2
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184297_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12696
Sequence Type Exemplar sequence
Representative Public ID Y32B12B.5 NCBI
Target Description Y32B12B.5 /REP_DB=WormBase Gene ID /WP=CE19065 /TR=Q9XX33 /GB=CAA21007.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074791(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074791 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-149) (str-149) mRNA, complete cds. 11/11 None
Y32B12B.5 ENSEMBL cdna:known chromosome:CEL140:V:16575442:16577534:1 gene:Y32B12B.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012875 5/11 Cross Hyb Matching Probes None
GENEFINDER00000012880 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16575441-16577534(+) 98.01 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-149
Ensembl Y32B12B.5
Entrez Gene 189568 Entrez gene
SwissProt Q9XX33 EMBL-EBI
WormBase CE19065 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21007 Hypothetical protein Y32B12B.5 [Caenorhabditis elegans] ref|NP_507192.1| Seven TM Receptor family member (str-149) [Caenorhabditis elegans] 0.0
blast CAB07276 Hypothetical protein T03E6.1 [Caenorhabditis elegans] ref|NP_507193.1| Seven TM Receptor family member (str-151) [Caenorhabditis elegans] 1.0E-162
blast CAB07278 Hypothetical protein T03E6.4 [Caenorhabditis elegans] ref|NP_507196.1| Seven TM Receptor family member (str-150) [Caenorhabditis elegans] 1.0E-159
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507192.1 7 132-154,166-188,208-230,251-273,328-350,370-392,407-429
Y32B12B.5 7 132-154,166-188,208-230,251-273,328-350,370-392,407-429
Sequence
Target Sequence 
>C. ELEGANS:184297_AT
gaaggtgtcctttatcggatcgatatattggtcgataggggaaaatggagagaaaatttg
gaatttttttgagattgggtttgcatttggctgtgtaatgattattgttgtctgcttcac
gacaattctattctgttcactgaacatttattttttcatgacaagcattcaatgccatat
gagcacaagaacattggaactcaatcgccaactcttggtcaccctaagctttcagactct
tttaccatttgtcatgatgcatagtcctgtcggattgttgttctgtcttccattggttga
agtttacgttggatatattgcgaattacgtgggcgccagtttggctctctatcccgcgtt
ggtgccactgattgctatattcacaatcaatgggttcagaaaaacagtcatgaaacgtct
ccgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGTGTCCTTTATCGGATCGATA 325 335 906 Antisense
GATTGGGTTTGCATTTGGCTGTGTA 380 435 978 Antisense
TGTAATGATTATTGTTGTCTGCTTC 287 559 999 Antisense
GACAATTCTATTCTGTTCACTGAAC 219 365 1026 Antisense
AAGCATTCAATGCCATATGAGCACA 388 151 1068 Antisense
AACTCAATCGCCAACTCTTGGTCAC 148 141 1103 Antisense
TCTTGGTCACCCTAAGCTTTCAGAC 222 619 1118 Antisense
TTGTCATGATGCATAGTCCTGTCGG 521 707 1154 Antisense
TTCTGTCTTCCATTGGTTGAAGTTT 68 695 1186 Antisense
GGATATATTGCGAATTACGTGGGCG 227 511 1216 Antisense
AAACAGTCATGAAACGTCTCCGAAG 159 129 1307 Antisense
Sequence Source Affymetrix Proprietary Database