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[184296_at]

Description C33A12.13 /REP_DB=WormBase Gene ID /WP=CE15666 /TR=O17633 /GB=CAA92796.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 12      6grp_cgc > 40      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 31.1
(-2.6)
A 		40.3
(-1.8)
A 		27
(-3)
A 		92.9
(3)
P 		66
B 34
(-1)
P 		58.8
(3)
P 		21.2
(-3)
A 		42.2
(0.4)
P 		38
C 38.7
(0.1)
M 		3.6
(-3)
A 		17.2
(-1.8)
A 		70.5
(3)
P 		67
avr 34.6
(-1.4) 		34.2
(-1.4) 		21.8
(-3) 		68.5
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 56.1
(3)
A 		6
(-3)
A 		31.1
(0)
P 		28
(-0.4)
A 		19.5
(-1.4)
A 		16.9
(-1.7)
A 		50
B 25.7
(0.1)
A 		35.6
(2)
P 		23.3
(-0.4)
A 		40.5
(3)
P 		26.7
(0.3)
A 		10.2
(-3)
A 		30
C 27.2
(-1.3)
A 		58.8
(3)
P 		27.4
(-1.3)
A 		23.9
(-1.8)
A 		15
(-3)
A 		16.2
(-2.8)
A 		44
avr 36.3
(3) 		33.5
(2.2) 		27.3
(0.5) 		30.8
(1.5) 		20.4
(-1.4) 		14.4
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 11.3
(0.9)
A 		8.8
(-1.4)
A 		7.1
(-3)
A 		13.6
(3)
P 		7
B 10.8
(0.7)
P 		14.5
(3)
P 		4.9
(-3)
A 		9
(-0.4)
P 		10
C 12.8
(3)
M 		1
(-3)
A 		6
(-0.5)
A 		11.9
(2.5)
P 		12
avr 11.6
(3) 		8.1
(-0.8) 		6
(-3) 		11.5
(2.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 10.3
(3)
A 		2.1
(-3)
A 		6.8
(0.4)
P 		7.1
(0.7)
A 		5.9
(-0.2)
A 		4.1
(-1.5)
A 		8
B 8.9
(0.8)
A 		11.8
(3)
P 		5.7
(-1.6)
A 		10.7
(2.2)
P 		10.9
(2.3)
A 		3.8
(-3)
A 		8
C 10.1
(-0.6)
A 		17.9
(3)
P 		7
(-2)
A 		4.8
(-3)
A 		4.8
(-3)
A 		5.4
(-2.7)
A 		13
avr 9.8
(2.2) 		10.6
(3) 		6.5
(-1) 		7.5
(0) 		7.2
(-0.3) 		4.4
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184296_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10312
Sequence Type Exemplar sequence
Representative Public ID C33A12.13 NCBI
Target Description C33A12.13 /REP_DB=WormBase Gene ID /WP=CE15666 /TR=O17633 /GB=CAA92796.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069274(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069274 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-2) (sru-2) mRNA, complete cds. 11/11 None
SNAP00000009020 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9486775:9487547:1 10/11 None
GENEFINDER00000009043 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9486249:9487547:1 11/11 None
C33A12.13 ENSEMBL cdna:known chromosome:CEL140:IV:9486249:9487547:1 gene:C33A12.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9486254-9487553(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sru-2
Ensembl C33A12.13
Entrez Gene 183145 Entrez gene
SwissProt O17633 EMBL-EBI
WormBase CE15666 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92796 Hypothetical protein C33A12.13 [Caenorhabditis elegans] ref|NP_501675.1| Serpentine Receptor, class U family member (sru-2) [Caenorhabditis elegans] 0.0
blast CAA92796 Hypothetical protein C33A12.13 [Caenorhabditis elegans] ref|NP_501675.1| Serpentine Receptor, class U family member (sru-2) [Caenorhabditis elegans] 1.0E-173
blast CAE74025 Hypothetical protein CBG21673 [Caenorhabditis briggsae] 1.0E-109
blast CAA92797 Hypothetical protein C33A12.14 [Caenorhabditis elegans] ref|NP_501676.2| Serpentine Receptor, class U family member (sru-1) [Caenorhabditis elegans] 1.0E-108
blast CAE74025 Hypothetical protein CBG21673 [Caenorhabditis briggsae] 1.0E-101
blast CAA92797 Hypothetical protein C33A12.14 [Caenorhabditis elegans] ref|NP_501676.2| Serpentine Receptor, class U family member (sru-1) [Caenorhabditis elegans] 1.0E-101
blast CAA92796 Hypothetical protein C33A12.13 [Caenorhabditis elegans] ref|NP_501675.1| Serpentine Receptor, class U family member (sru-2) [Caenorhabditis elegans] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 5.5E-69
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 9.0E-28
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 2.2E-65
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501675.1 7 32-54,71-93,116-138,159-181,209-231,259-281,291-313
C33A12.13 7 32-54,71-93,116-138,159-181,209-231,259-281,291-313
SNAP00000009020 4 7-25,53-75,103-125,135-157
GENEFINDER00000009043 7 34-56,69-91,101-123,144-166,194-216,244-266,276-298
Sequence
Target Sequence 
>C. ELEGANS:184296_AT
atgccttttgcctattgtgcgtttaattatattaacatttccaaaagaccatgatagaat
taacacgatcataatgcgagtagccataccatttgccattgtttatccaatattttcaac
attctttttaatcccagcaattggaacatgtaagcaattagaatatccatacccatttgg
agcaatttggacttattattctggtgcaatctttgggttccgaaattccacattttattt
ggtgaatactgttatatgggttactttagcaaccatcgcaaatataatgctatttttcaa
aataacaaaagcaagggaacggctgataacagttcaaacaagtgggatatcacatcgagc
acaagtttcaattacaagaaccacaatagcaatgattgcattttatgtgacaaatggaat
gtttattttgaactactttatgttctatggtacaagctcaacaatggcatatagcatcgt
tcttcgaccattcggaaatgatctccaaatatgtatgatcgcatggattctatttctgac
tcatccagtttttaagaaaacaattgttaacccagaagcatcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCTTTTGCCTATTGTGCGTTTA 573 41 408 Antisense
AGTAGCCATACCATTTGCCATTGTT 247 63 486 Antisense
TCAACATTCTTTTTAATCCCAGCAA 51 631 523 Antisense
TTCTGGTGCAATCTTTGGGTTCCGA 254 685 606 Antisense
TGGGTTCCGAAATTCCACATTTTAT 279 549 621 Antisense
GTTACTTTAGCAACCATCGCAAATA 46 447 667 Antisense
GGATATCACATCGAGCACAAGTTTC 564 509 752 Antisense
ATATAGCATCGTTCTTCGACCATTC 85 21 876 Antisense
GATCGCATGGATTCTATTTCTGACT 257 417 924 Antisense
TCTATTTCTGACTCATCCAGTTTTT 379 615 936 Antisense
ACAATTGTTAACCCAGAAGCATCTA 119 113 967 Antisense
Sequence Source Affymetrix Proprietary Database