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[184295_at]

Description Y37H2A.11 /REP_DB=WormBase Gene ID /WP=CE25241 /TR=Q9U2N2 /GB=CAB60578.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 08      6grp_total > 19      4grp_total > 32      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 80.5
(-3)
A 		135.8
(-0.4)
P 		209.1
(3)
P 		186.3
(1.9)
P 		129
B 74.4
(-3)
A 		161.2
(2.2)
P 		174.1
(3)
P 		129.8
(0.3)
P 		100
C 117.3
(-3)
A 		140.2
(-1.9)
P 		169.8
(-0.5)
P 		244.8
(3)
P 		128
avr 90.7
(-3) 		145.7
(0.4) 		184.3
(2.8) 		187
(3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 266.1
(3)
P 		207.1
(0.8)
P 		107.5
(-3)
A 		219.6
(1.2)
P 		169.8
(-0.6)
P 		110.4
(-2.9)
P 		159
B 327
(3)
P 		150.5
(-1.2)
P 		86.3
(-2.7)
P 		203.2
(0.1)
P 		159.9
(-0.9)
P 		72.4
(-3)
A 		255
C 219.1
(2.7)
P 		152.7
(-0.6)
P 		127.6
(-1.8)
P 		154.8
(-0.5)
P 		226.2
(3)
P 		103.3
(-3)
P 		123
avr 270.7
(3) 		170.1
(-0.4) 		107.1
(-2.6) 		192.5
(0.3) 		185.3
(0.1) 		95.4
(-3) 		175
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 29.3
(-2.6)
A 		29.5
(-2.5)
P 		54.7
(3)
P 		27.3
(-3)
P 		27
B 23.7
(-3)
A 		39.8
(2.8)
P 		40.4
(3)
P 		27.7
(-1.6)
P 		17
C 38.8
(-3)
A 		40.3
(-2.6)
P 		59.2
(3)
P 		41.3
(-2.3)
P 		20
avr 30.6
(-3) 		36.5
(-1.3) 		51.4
(3) 		32.1
(-2.6) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 49.1
(0.1)
P 		73.7
(3)
P 		23.4
(-3)
A 		55.7
(0.9)
P 		51.2
(0.3)
P 		26.9
(-2.6)
P 		50
B 113.8
(3)
P 		50.1
(-1.1)
P 		21
(-3)
P 		53.8
(-0.9)
P 		65
(-0.2)
P 		27
(-2.6)
A 		93
C 81.2
(3)
P 		46.6
(-1.1)
P 		32.5
(-2.8)
P 		31.1
(-3)
P 		73.2
(2)
P 		34.6
(-2.6)
P 		50
avr 81.4
(3) 		56.8
(0.4) 		25.6
(-3) 		46.9
(-0.7) 		63.1
(1) 		29.5
(-2.6) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184295_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12656
Sequence Type Exemplar sequence
Representative Public ID Y37H2A.11 NCBI
Target Description Y37H2A.11 /REP_DB=WormBase Gene ID /WP=CE25241 /TR=Q9U2N2 /GB=CAB60578.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075142(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075142 NCBI Caenorhabditis elegans Y37H2A.11 (Y37H2A.11) mRNA, complete cds. 11/11 None
Y37H2A.11 ENSEMBL cdna:known chromosome:CEL140:V:18144074:18147194:1 gene:Y37H2A.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18144073-18147194(+) 95.77 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37H2A.11
Entrez Gene 189634 Entrez gene
SwissProt Q9U2N2 EMBL-EBI
WormBase CE25241 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60578 Hypothetical protein Y37H2A.11 [Caenorhabditis elegans] ref|NP_507543.1| Y37H2A.11 [Caenorhabditis elegans] 0.0
blast CAB60577 Hypothetical protein Y37H2A.10 [Caenorhabditis elegans] ref|NP_507542.1| Y37H2A.10 [Caenorhabditis elegans] 6.0E-27
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507543.1 1 394-416
Y37H2A.11 1 394-416
Sequence
Target Sequence 
>C. ELEGANS:184295_AT
ttacttcattatgcacacctgtagcaagtacaatgaccaaaaggtaaccctatcgcttgt
cgatttggggattgttccatttgttgagggggaagtgatcaaaatcgataaggatgggtt
tcagaaggttctcaaaaagcatgcagccaagaaccctgctcccaaggttgagaaggtcca
agccaaaagagctaataataacagaaaaaaacgagatagccagcgcacagtagaaaagga
acatataagccacggaattgtgagcaccgagattccagcagcggatccgaaagcccacga
tgaatcgcctaaacagatgcctctagtaaagaaatcgaagaagagccagaaaaagaccaa
caaggaaattgtggaagtagctccggaggtaagagatgaggcaccacagctggaatccca
agtaaagaaacctaagaagacccagaaaaagctcaaaaagccgagctaccgagaagttgt
ggaagtgagcaccgaacctcaaacaattgaggaaaagggttttcctcgtatcatctggat
tgccagcgtcatttggatcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACTTCATTATGCACACCTGTAGC 117 683 663 Antisense
AGGTAACCCTATCGCTTGTCGATTT 383 49 704 Antisense
AAGCATGCAGCCAAGAACCCTGCTC 490 151 799 Antisense
GAACCCTGCTCCCAAGGTTGAGAAG 375 347 813 Antisense
AAACGAGATAGCCAGCGCACAGTAG 108 119 871 Antisense
TTGTGAGCACCGAGATTCCAGCAGC 276 709 920 Antisense
TTCCAGCAGCGGATCCGAAAGCCCA 392 699 935 Antisense
GAATCGCCTAAACAGATGCCTCTAG 242 327 964 Antisense
ATGAGGCACCACAGCTGGAATCCCA 157 47 1058 Antisense
AAAGGGTTTTCCTCGTATCATCTGG 680 119 1176 Antisense
GATTGCCAGCGTCATTTGGATCCTT 22 435 1200 Antisense
Sequence Source Affymetrix Proprietary Database