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[184294_at]

Description F43C11.5 /REP_DB=WormBase Gene ID /WP=CE23721 /TR=Q9U5B8 /GB=AAF16616.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 10.3
(-1.5)
A 		7.4
(-2.2)
A 		4.1
(-3)
A 		29.1
(3)
A 		25
B 3.1
(-3)
A 		9.6
(3)
A 		4.6
(-1.6)
A 		8
(1.5)
A 		7
C 2.8
(3)
A 		2.3
(0.3)
A 		1.7
(-3)
A 		2.8
(3)
A 		1
avr 5.4
(-1.8) 		6.4
(-1.2) 		3.5
(-3) 		13.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 2.3
(-1.7)
A 		1.8
(-3)
A 		4.1
(3)
A 		3.4
(1.2)
A 		2.2
(-2)
A 		3.3
(0.9)
A 		2
B 2.3
(-1.5)
A 		4.2
(2.1)
A 		1.5
(-3)
A 		4.7
(3)
A 		3.7
(1.1)
A 		2.7
(-0.8)
A 		3
C 1.5
(-3)
A 		3.8
(-0.2)
A 		6.2
(2.6)
A 		3
(-1.2)
A 		6.5
(3)
A 		3.1
(-1.1)
A 		5
avr 2
(-3) 		3.3
(0.7) 		3.9
(2.4) 		3.7
(1.9) 		4.1
(3) 		3
(-0.1) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 3.8
(2.1)
A 		1.6
(-2.1)
A 		1.1
(-3)
A 		4.3
(3)
A 		3
B 1
(-3)
A 		2.4
(3)
A 		1.1
(-2.6)
A 		1.7
(-0)
A 		1
C 0.9
(3)
A 		0.7
(-0)
A 		0.6
(-1.5)
A 		0.5
(-3)
A 		0
avr 1.9
(1.6) 		1.6
(0.2) 		0.9
(-3) 		2.2
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.6
(-0.6)
A 		0.9
(3)
A 		0.9
(3)
A 		0.7
(0.6)
A 		0.8
(1.8)
A 		1
B 0.8
(-0.8)
A 		1.4
(2.5)
A 		0.4
(-3)
A 		1.2
(1.4)
A 		1.5
(3)
A 		1
(0.3)
A 		1
C 0.5
(-3)
A 		1.2
(-0.4)
A 		1.6
(1.1)
A 		0.6
(-2.6)
A 		2.1
(3)
A 		1
(-1.1)
A 		2
avr 0.6
(-3) 		1.1
(0.8) 		1
(0) 		0.9
(-0.8) 		1.4
(3) 		0.9
(-0.8) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184294_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4660
Sequence Type Exemplar sequence
Representative Public ID F43C11.5 NCBI
Target Description F43C11.5 /REP_DB=WormBase Gene ID /WP=CE23721 /TR=Q9U5B8 /GB=AAF16616.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061847(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061847 NCBI Caenorhabditis elegans F43C11.5 (F43C11.5) mRNA, complete cds. 11/11 None
F43C11.5 ENSEMBL cdna:known chromosome:CEL140:II:2345119:2346029:1 gene:F43C11.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012995 5/11 Cross Hyb Matching Probes None
GENEFINDER00000013013 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2345117-2346028(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43C11.5
Entrez Gene 185699 Entrez gene
SwissProt Q9U5B8 EMBL-EBI
WormBase CE23721 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF16616 Hypothetical protein F43C11.5 [Caenorhabditis elegans] ref|NP_494248.1| F43C11.5 [Caenorhabditis elegans] 3.0E-84
blast NP_508647 T14G12.6 [Caenorhabditis elegans] gb|AAA82438.1| Hypothetical protein T14G12.6 [Caenorhabditis elegans] 4.0E-39
blast AAC26276 Hypothetical protein F16G10.8 [Caenorhabditis elegans] ref|NP_494262.1| F16G10.8 [Caenorhabditis elegans] 6.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 1.7E-4
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 3.6E-28
Sequence
Target Sequence 
>C. ELEGANS:184294_AT
attggctcctaagatgagcacccaagctcctgaggaaagtacaatgggtgttgataccac
aatggccggtgataaaacaactgaggaagtgatagaaatgacaacacccgcaatggagtc
ttcaaccatgacagaaaaagaatgcccggttagtgcagccaagtgtccagatttggcgac
agtggtcaaagttcgcaccaaatttttttcaatcttcatcaccgattcaattttaccccc
agctacaccggaacaaattgcactcgggttaaatgcattttatgggcttgtatgtgatag
taataaattgacggccacagagtatccacgtggaattatcacttataccggttccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGCTCCTAAGATGAGCACCCAA 275 3 54 Antisense
GAGCACCCAAGCTCCTGAGGAAAGT 80 387 69 Antisense
GGGTGTTGATACCACAATGGCCGGT 72 495 99 Antisense
GAAATGACAACACCCGCAATGGAGT 258 361 148 Antisense
AAGAATGCCCGGTTAGTGCAGCCAA 632 151 191 Antisense
GTTAGTGCAGCCAAGTGTCCAGATT 360 445 202 Antisense
GACAGTGGTCAAAGTTCGCACCAAA 235 369 231 Antisense
AAATTTTTTTCAATCTTCATCACCG 542 115 253 Antisense
TTCATCACCGATTCAATTTTACCCC 677 685 268 Antisense
AGCTACACCGGAACAAATTGCACTC 304 79 294 Antisense
GAATTATCACTTATACCGGTTCCGG 168 325 386 Antisense
Sequence Source Affymetrix Proprietary Database