[Home] | [Total List]

[184292_at]

Description Y53C10A.3 /REP_DB=WormBase Gene ID /WP=CE22371 /TR=Q9XW54 /GB=CAA22137.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 0      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 3.2
(-3)
A 		6.7
(-2.7)
A 		5.5
(-2.8)
A 		71.4
(3)
A 		68
B 5.7
(-2.6)
A 		4.4
(-3)
A 		23.9
(3)
A 		5.3
(-2.7)
A 		20
C 3.7
(-3)
A 		4.5
(-2.9)
A 		42.8
(3)
A 		30.1
(1.1)
A 		39
avr 4.2
(-3) 		5.2
(-2.8) 		24.1
(0.8) 		35.6
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 4.6
(-2.6)
A 		1.4
(-3)
A 		2.3
(-2.9)
A 		2.3
(-2.9)
A 		10.1
(-1.8)
A 		45.7
(3)
A 		44
B 3
(-3)
A 		5.4
(-2.4)
A 		3.1
(-3)
A 		23.5
(2)
A 		3.9
(-2.8)
A 		27.5
(3)
A 		25
C 2.8
(-2.7)
A 		3.1
(-2.5)
A 		2.2
(-3)
A 		3.1
(-2.5)
A 		13.7
(3)
A 		3.4
(-2.4)
A 		12
avr 3.5
(-2.7) 		3.3
(-2.8) 		2.5
(-3) 		9.6
(-1.1) 		9.2
(-1.3) 		25.5
(3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.2
(-3)
A 		1.5
(-2.8)
A 		1.4
(-2.9)
A 		10.5
(3)
A 		9
B 1.8
(-2)
A 		1.1
(-3)
A 		5.5
(3)
A 		1.1
(-3)
A 		4
C 1.2
(-3)
A 		1.3
(-3)
A 		14.9
(3)
A 		5.1
(-1.3)
A 		14
avr 1.4
(-2.9) 		1.3
(-3) 		7.3
(3) 		5.6
(1.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.9
(-2.8)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		3.1
(-1.5)
A 		11.1
(3)
A 		11
B 1.1
(-2.8)
A 		1.8
(-2.3)
A 		0.7
(-3)
A 		6.2
(0.4)
A 		1.6
(-2.4)
A 		10.3
(3)
A 		10
C 1
(-2.4)
A 		1
(-2.4)
A 		0.6
(-3)
A 		0.6
(-3)
A 		4.4
(3)
A 		1.1
(-2.2)
A 		4
avr 1
(-2.7) 		1.1
(-2.6) 		0.6
(-3) 		2.5
(-1.3) 		3
(-0.9) 		7.5
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184292_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1538
Sequence Type Exemplar sequence
Representative Public ID Y53C10A.3 NCBI
Target Description Y53C10A.3 /REP_DB=WormBase Gene ID /WP=CE22371 /TR=Q9XW54 /GB=CAA22137.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060633(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060633 NCBI Caenorhabditis elegans Y53C10A.3 (Y53C10A.3) mRNA, complete cds. 11/11 None
GENEFINDER00000000702 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11977074:11979919:-1 11/11 None
Y53C10A.3 ENSEMBL cdna:known chromosome:CEL140:I:11977074:11979919:-1 gene:Y53C10A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000681 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11977004-11979850(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y53C10A.3
Entrez Gene 190192 Entrez gene
SwissProt Q9XW54 EMBL-EBI
WormBase CE22371 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA22137 Hypothetical protein Y53C10A.3 [Caenorhabditis elegans] ref|NP_493034.1| Y53C10A.3 [Caenorhabditis elegans] 1.0E-157
blast AAS72409 heat shock transcription factor 1 [Caenorhabditis elegans] emb|CAA22146.1| Hypothetical protein Y53C10A.12 [Caenorhabditis elegans] ref|NP_493031.1| Heat Shock Factor family member (hsf-1) [Caenorhabditis elegans] 2.0E-17
blast CAE60334 Hypothetical protein CBG03926 [Caenorhabditis briggsae] 4.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 2.6E-21
Pfam IPR000232 EMBL-EBI Heat shock factor (HSF)-type DNA-binding domain 3.1E-4
Sequence
Target Sequence 
>C. ELEGANS:184292_AT
gaatgttccaaaggacgcttctccggattcaattgaaagttgcttagacacattctccgt
tcgaaaaatgtgcgcatatcaaggaaatccgtcgatttcccgattgttgcaaatgcaaca
ggatcagcagaaaatgattgaacaaactaaaaatatgtcaatcgatgagcaaaatgctcg
taccgtcctaataaatctgtggcatgttctagaaagtcgaatgtttcaatcaattgccta
ttgggataatgaaagcttccatatttctgatccatacttgttcgagagacatgttctgaa
attattcaagactaacgatattaatgacatttttaaagtgctgtttatgtgcggcttcgg
caagattacccacgtctctcacggctgccatgttcacctggagtttagccatccgttttt
caaaaaaggacgttttgatctactatcacaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGTTCCAAAGGACGCTTCTCCG 5 333 396 Antisense
GACGCTTCTCCGGATTCAATTGAAA 362 381 409 Antisense
AAGTTGCTTAGACACATTCTCCGTT 631 153 432 Antisense
TCCGTCGATTTCCCGATTGTTGCAA 400 595 483 Antisense
ATGCTCGTACCGTCCTAATAAATCT 354 41 569 Antisense
TATTTCTGATCCATACTTGTTCGAG 456 661 657 Antisense
AAAGTGCTGTTTATGTGCGGCTTCG 673 121 730 Antisense
TGTGCGGCTTCGGCAAGATTACCCA 49 557 743 Antisense
GCTGCCATGTTCACCTGGAGTTTAG 51 299 779 Antisense
TGGAGTTTAGCCATCCGTTTTTCAA 388 549 794 Antisense
GGACGTTTTGATCTACTATCACAGA 50 525 823 Antisense
Sequence Source Affymetrix Proprietary Database