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[184291_s_at]

Description T24C12.3 /REP_DB=WormBase Gene ID /WP=CE28492 /TR=Q22721 /GB=AAA82388.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 65      4grp_highest_8_8 > 27      4grp_high_8_8 > 56      6grp_highest_nonorm > 82      6grp_total > 65      4grp_total > 63      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 360
1 2 3 4 range
A 595
(3)
P 		582.1
(1.6)
P 		581.3
(1.5)
P 		539.2
(-3)
P 		56
B 634.9
(-0.2)
P 		473.1
(-3)
P 		817.5
(3)
P 		586.6
(-1)
P 		344
C 593.7
(2.3)
P 		457.1
(-3)
P 		612.2
(3)
P 		525.4
(-0.4)
P 		155
avr 607.9
(0.7) 		504.1
(-3) 		670.3
(3) 		550.4
(-1.3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 302
1 2 3 4 5 6 range
A 426.7
(2)
P 		409.3
(1.4)
P 		426.3
(2)
P 		408.7
(1.4)
P 		280
(-3)
P 		455
(3)
P 		175
B 410.1
(0.2)
P 		256.8
(-3)
P 		547.6
(3)
P 		370.4
(-0.6)
P 		255.3
(-3)
P 		530.5
(2.6)
P 		292
C 333
(-0.4)
P 		246
(-3)
P 		382.3
(1.1)
P 		409.4
(1.9)
P 		256.2
(-2.7)
P 		447.1
(3)
P 		201
avr 389.9
(0.5) 		304
(-1.9) 		452.1
(2.3) 		396.2
(0.7) 		263.8
(-3) 		477.5
(3) 		214
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 216.6
(3)
P 		126.4
(-0.9)
P 		152
(0.2)
P 		78.9
(-3)
P 		138
B 202.5
(3)
P 		116.8
(-3)
P 		189.4
(2.1)
P 		125
(-2.4)
P 		86
C 196.5
(2.2)
P 		131.4
(-0.9)
P 		213.4
(3)
P 		88.6
(-3)
P 		125
avr 205.2
(3) 		124.9
(-1.5) 		184.9
(1.9) 		97.5
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 78.7
(-3)
P 		145.6
(3)
P 		92.8
(-1.7)
P 		103.7
(-0.8)
P 		84.5
(-2.5)
P 		110.8
(-0.1)
P 		67
B 142.7
(0.1)
P 		85.5
(-3)
P 		133
(-0.5)
P 		98.1
(-2.3)
P 		103.7
(-2)
P 		197.8
(3)
P 		112
C 123.4
(0.9)
P 		75.1
(-3)
P 		97.3
(-1.2)
P 		82.3
(-2.4)
P 		82.9
(-2.4)
P 		149.7
(3)
P 		75
avr 114.9
(-0.6) 		102.1
(-1.9) 		107.7
(-1.3) 		94.7
(-2.6) 		90.4
(-3) 		152.8
(3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184291_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18261
Sequence Type Exemplar sequence
Representative Public ID T24C12.3 NCBI
Target Description T24C12.3 /REP_DB=WormBase Gene ID /WP=CE28492 /TR=Q22721 /GB=AAA82388.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076004(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076004 NCBI Caenorhabditis elegans T24C12.3 (T24C12.3) mRNA, complete cds. 11/11 None
SNAP00000041014 ENSEMBL cdna:SNAP chromosome:CEL140:X:2196597:2198946:-1 11/11 None
GENEFINDER00000041020 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2196597:2198985:-1 11/11 None
T24C12.3 ENSEMBL cdna:known chromosome:CEL140:X:2196504:2203886:-1 gene:T24C12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2196596-2203832(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24C12.3
Entrez Gene 180531 Entrez gene
SwissProt Q22721 EMBL-EBI
WormBase CE31247 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261855_AT indigoidine synthase A family protein at
DROSOPHILA_2:1635874_AT dm
DROSGENOME1:145537_AT dm
CHICKEN:GGAAFFX.8139.1.S1_AT similar to CG2794-PA gga
CHICKEN:GGAAFFX.8139.1.S1_S_AT similar to CG2794-PA gga
Protein Similarities
Method ID Description E-Value
blast AAA82388 Hypothetical protein T24C12.3 [Caenorhabditis elegans] ref|NP_508405.2| T24C12.3 [Caenorhabditis elegans] 0.0
blast CAE68340 Hypothetical protein CBG14065 [Caenorhabditis briggsae] 0.0
blast CAE56226 Hypothetical protein CBG23859 [Caenorhabditis briggsae] 0.0
blast AAA82388 Hypothetical protein T24C12.3 [Caenorhabditis elegans] ref|NP_508405.2| T24C12.3 [Caenorhabditis elegans] 1.0E-157
blast AAA82388 Hypothetical protein T24C12.3 [Caenorhabditis elegans] ref|NP_508405.2| T24C12.3 [Caenorhabditis elegans] 1.0E-149
blast CAE56226 Hypothetical protein CBG23859 [Caenorhabditis briggsae] 1.0E-109
blast CAE68340 Hypothetical protein CBG14065 [Caenorhabditis briggsae] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR007342 EMBL-EBI Indigoidine synthase A like protein 1.0E-126
Pfam IPR002173 EMBL-EBI Carbohydrate kinase, PfkB 1.6E-59
Pfam IPR002173 EMBL-EBI Carbohydrate kinase, PfkB 8.4E-50
Pfam IPR002173 EMBL-EBI Carbohydrate kinase, PfkB 1.4E-51
Sequence
Target Sequence 
>C. ELEGANS:184291_S_AT
tcgagcccacggacattgacaaagtgaaaaaggtgttcgacacaggcttggttggagctg
taactgccgcatcgccaaatgccaatgagtttctgaaatgggctaaactctgtcacgtct
ccgtagatccgtcggtcattgatacagccgatggtgtgctggaacttatagaaaaggaga
aaactaagctgctactcaatacttccatttttattgtgacattggcgaataagggatcgg
cagtggtatatagaaataaacttggccaacttgaattccaatcgctcccacctccacttc
aaatgaacaaagtcgtatcggtttccggtgccggtgatagtttcaacagtggagtaattg
ctggattggctcataacaaaacagtcgtcgaatctctccaaattggacaagaatgtgctc
gtctaactcttcaaacgtctctggcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAGCCCACGGACATTGACAAAGT 109 599 1361 Antisense
GTGTTCGACACAGGCTTGGTTGGAG 331 483 1393 Antisense
TTGGTTGGAGCTGTAACTGCCGCAT 141 707 1408 Antisense
TGCCGCATCGCCAAATGCCAATGAG 676 583 1425 Antisense
AAATGGGCTAAACTCTGTCACGTCT 274 121 1456 Antisense
AGATCCGTCGGTCATTGATACAGCC 197 67 1485 Antisense
AAGCTGCTACTCAATACTTCCATTT 683 149 1546 Antisense
GTATCGGTTTCCGGTGCCGGTGATA 279 455 1675 Antisense
AGTCGTCGAATCTCTCCAAATTGGA 545 61 1743 Antisense
AAGAATGTGCTCGTCTAACTCTTCA 135 153 1769 Antisense
AACTCTTCAAACGTCTCTGGCAATT 318 141 1785 Antisense
Sequence Source Affymetrix Proprietary Database