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[184289_at]

Description F22H10.3 /REP_DB=WormBase Gene ID /WP=CE09572 /TR=Q94188 /GB=AAB09098.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 31      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 28      6grp_total > 42      4grp_total > 52      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6908
1 2 3 4 range
A 12463.4
(1)
P 		14008.1
(3)
P 		11867.1
(0.3)
P 		9279.8
(-3)
P 		4728
B 11895.8
(2.7)
P 		10879.4
(0.9)
P 		12084.9
(3)
P 		8577.3
(-3)
P 		3508
C 11768.2
(3)
P 		10447
(1.3)
P 		10101.4
(0.9)
P 		7099.9
(-3)
P 		4668
avr 12042.5
(3) 		11778.2
(2.6) 		11351.1
(1.9) 		8319
(-3) 		3724

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5622
1 2 3 4 5 6 range
A 10955.2
(0.5)
P 		10063.8
(-0.7)
P 		12930.7
(3)
P 		10262.5
(-0.4)
P 		8268.1
(-3)
P 		8518.1
(-2.7)
P 		4663
B 11329.5
(1.2)
P 		10640.8
(0.5)
P 		12992.9
(3)
P 		8922.9
(-1.3)
P 		8577.5
(-1.7)
P 		7371.4
(-3)
P 		5622
C 10485.2
(1)
P 		9910.5
(0.2)
P 		12013.2
(3)
P 		9142.6
(-0.8)
P 		9247.5
(-0.7)
P 		7497.4
(-3)
P 		4516
avr 10923.3
(0.9) 		10205
(-0) 		12645.6
(3) 		9442.7
(-1) 		8697.7
(-1.9) 		7795.6
(-3) 		4850
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3341
1 2 3 4 range
A 4537.9
(3)
P 		3040.8
(0.2)
P 		3102.3
(0.3)
P 		1358.4
(-3)
P 		3180
B 3793.5
(3)
P 		2687
(-0.4)
P 		2800.3
(-0)
P 		1827.8
(-3)
P 		1966
C 3895.6
(3)
P 		3003.6
(1)
P 		3520.6
(2.2)
P 		1197.2
(-3)
P 		2698
avr 4075.7
(3) 		2910.5
(0.3) 		3141.1
(0.9) 		1461.1
(-3) 		2615

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2104
1 2 3 4 5 6 range
A 2019.5
(-3)
P 		3579.2
(3)
P 		2816
(0.1)
P 		2602.8
(-0.8)
P 		2495
(-1.2)
P 		2073.9
(-2.8)
P 		1560
B 3942.1
(3)
P 		3541.9
(1.5)
P 		3155.1
(0)
P 		2363.4
(-3)
P 		3484.9
(1.3)
P 		2748.8
(-1.5)
P 		1579
C 3886.4
(3)
P 		3024
(0.5)
P 		3057.6
(0.6)
P 		1838.6
(-3)
P 		2992.4
(0.4)
P 		2509.8
(-1)
P 		2048
avr 3282.7
(2.5) 		3381.7
(3) 		3009.6
(1) 		2268.3
(-3) 		2990.8
(0.9) 		2444.2
(-2.1) 		1113
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184289_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17374
Sequence Type Exemplar sequence
Representative Public ID F22H10.3 NCBI
Target Description F22H10.3 /REP_DB=WormBase Gene ID /WP=CE09572 /TR=Q94188 /GB=AAB09098.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078292(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078292 NCBI Caenorhabditis elegans F22H10.3 (F22H10.3) mRNA, complete cds. 11/11 None
SNAP00000018977 ENSEMBL cdna:SNAP chromosome:CEL140:X:16677381:16677620:-1 11/11 None
GENEFINDER00000018984 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16677381:16677620:-1 11/11 None
F22H10.3 ENSEMBL cdna:known chromosome:CEL140:X:16677381:16677620:-1 gene:F22H10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16677380-16677620(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F22H10.3
Entrez Gene 184873 Entrez gene
SwissProt Q94188 EMBL-EBI
WormBase CE09572 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:184289_AT
ggatatgtcccaccaccaatgggatatgctccaccaattgctccaattccaatggttgct
ccaatgccagttccagttgcaccaatgatggctgcaccaatgtatggaatgccaccacca
gttgttgttattgaggaaccatatcatcatcatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATATGTCCCACCACCAATGGGAT 112 511 61 Antisense
CACCAATGGGATATGCTCCACCAAT 666 201 74 Antisense
TCCACCAATTGCTCCAATTCCAATG 485 589 90 Antisense
TGCTCCAATTCCAATGGTTGCTCCA 29 583 99 Antisense
CAATGGTTGCTCCAATGCCAGTTCC 260 183 110 Antisense
GTTCCAGTTGCACCAATGATGGCTG 4 441 130 Antisense
GCACCAATGATGGCTGCACCAATGT 286 315 139 Antisense
GGCTGCACCAATGTATGGAATGCCA 364 539 150 Antisense
CAATGTATGGAATGCCACCACCAGT 359 183 158 Antisense
GCCACCACCAGTTGTTGTTATTGAG 300 279 171 Antisense
TTGAGGAACCATATCATCATCATCA 40 705 191 Antisense
Sequence Source Affymetrix Proprietary Database