[Home] | [Total List]

[184286_at]

Description Y59A8B.13 /REP_DB=WormBase Gene ID /WP=CE26207 /TR=Q9GRY8 /GB=CAC14411.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 79      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 91      6grp_total > 69      4grp_total > 22      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 251.6
(1.2)
P 		181.7
(-1.9)
P 		158.5
(-3)
P 		291
(3)
P 		133
B 345.1
(3)
P 		218.2
(-0.5)
P 		125.9
(-3)
P 		262.2
(0.7)
P 		219
C 270
(0.6)
P 		194.2
(-3)
P 		212.7
(-2.1)
P 		318.9
(3)
P 		125
avr 288.9
(2.9) 		198
(-1.4) 		165.7
(-3) 		290.7
(3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 215.7
(2.1)
P 		153.4
(-1.3)
P 		123.1
(-3)
P 		135.6
(-2.3)
P 		168.8
(-0.5)
P 		231.6
(3)
P 		109
B 162.7
(-1.7)
P 		172.2
(-1.1)
P 		139.3
(-3)
P 		147
(-2.6)
P 		195.9
(0.2)
P 		245.4
(3)
P 		106
C 166.5
(-0.1)
P 		128.7
(-2.2)
P 		160.3
(-0.4)
P 		113.4
(-3)
P 		167.3
(-0)
P 		222.7
(3)
P 		109
avr 181.6
(-0.1) 		151.4
(-1.8) 		140.9
(-2.5) 		132
(-3) 		177.3
(-0.3) 		233.2
(3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 91.6
(3)
P 		39.4
(-3)
P 		41.4
(-2.8)
P 		42.6
(-2.6)
P 		52
B 110.1
(3)
P 		53.9
(-1.2)
P 		29.2
(-3)
P 		55.9
(-1)
P 		81
C 89.4
(3)
P 		55.8
(-2.7)
P 		74.1
(0.4)
P 		53.8
(-3)
P 		36
avr 97
(3) 		49.7
(-2.8) 		48.2
(-3) 		50.8
(-2.7) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 39.8
(-0.4)
P 		54.5
(2.6)
P 		26.8
(-3)
P 		34.4
(-1.5)
P 		50.9
(1.9)
P 		56.4
(3)
P 		30
B 56.6
(-0.6)
P 		57.3
(-0.6)
P 		33.8
(-3)
P 		38.9
(-2.5)
P 		79.6
(1.8)
P 		91.5
(3)
P 		58
C 61.7
(1.5)
P 		39.3
(-1.1)
P 		40.8
(-0.9)
P 		22.8
(-3)
P 		54.1
(0.6)
P 		74.5
(3)
P 		52
avr 52.7
(-0) 		50.4
(-0.4) 		33.8
(-2.7) 		32
(-3) 		61.5
(1.2) 		74.1
(3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184286_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13493
Sequence Type Exemplar sequence
Representative Public ID Y59A8B.13 NCBI
Target Description Y59A8B.13 /REP_DB=WormBase Gene ID /WP=CE26207 /TR=Q9GRY8 /GB=CAC14411.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075131(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075131 NCBI Caenorhabditis elegans Y59A8B.13 (Y59A8B.13) mRNA, complete cds. 11/11 None
GENEFINDER00000028730 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18089707:18094635:1 11/11 None
Y59A8B.13 ENSEMBL cdna:known chromosome:CEL140:V:18089707:18094635:1 gene:Y59A8B.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028704 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18089706-18094635(+) 94.43 100.0
Public Domain and Genome References
Gene Title
Ensembl Y59A8B.13
Entrez Gene 190396 Entrez gene
SwissProt Q9GRY8 EMBL-EBI
WormBase CE26207 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC14411 Hypothetical protein Y59A8B.13 [Caenorhabditis elegans] ref|NP_507532.1| Y59A8B.13 [Caenorhabditis elegans] 0.0
blast CAC14411 Hypothetical protein Y59A8B.13 [Caenorhabditis elegans] ref|NP_507532.1| Y59A8B.13 [Caenorhabditis elegans] 1.0E-178
blast CAE61700 Hypothetical protein CBG05648 [Caenorhabditis briggsae] 7.0E-75
blast CAE61700 Hypothetical protein CBG05648 [Caenorhabditis briggsae] 8.0E-75
Sequence
Target Sequence 
>C. ELEGANS:184286_AT
acgacatttccgcgaacatcttgttaaacacgatagaagtgataaaatcgaagaaggtgt
cgatccgtgtgctctttcaaatcagcaacttgttcgttatatggtcctcgatgaaatgga
aaaagtagctgaaaatcgaaaaacacatgagttttttgaggttaatgttatttctagtgt
gattttttttgtaaattttgataaaatagcgttaaaaaattatttttgttatattttttc
caaaataggaatcggatttcaacgtggatatacctcatattcgtcatcatcaggtgcttc
ttctaaaccgcctacagtaactatccgtgcgagaaccaatgtcacaattgcaccgaaaat
tcagggagtagtgacgtcatcacaaccaccgcctgtcgtaatatgccggaatgatgagcc
aaaaattgtgtggcatttggagaaaatgtgcaacaaaaaagaagacatttcgaggggtaa
aaaattaggaaaaaactggtttttttttcacgtagaaatagacgaaaaatctgaaaattg
gaagtttctgcgaaaattcttggaattttcatgtttttgcctcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGACATTTCCGCGAACATCTTGTT 661 91 480 Antisense
GATCCGTGTGCTCTTTCAAATCAGC 117 417 541 Antisense
GCAACTTGTTCGTTATATGGTCCTC 391 319 564 Antisense
AACGTGGATATACCTCATATTCGTC 243 143 740 Antisense
CATATTCGTCATCATCAGGTGCTTC 189 215 755 Antisense
TCATCAGGTGCTTCTTCTAAACCGC 205 619 766 Antisense
AAACCGCCTACAGTAACTATCCGTG 149 127 784 Antisense
ACTATCCGTGCGAGAACCAATGTCA 46 103 799 Antisense
GAACCAATGTCACAATTGCACCGAA 88 345 812 Antisense
CCACCGCCTGTCGTAATATGCCGGA 133 275 865 Antisense
GGAATTTTCATGTTTTTGCCTCAAA 506 533 1041 Antisense
Sequence Source Affymetrix Proprietary Database