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[184285_at]

Description C04E12.7 /REP_DB=WormBase Gene ID /WP=CE16820 /TR=O76675 /GB=AAC27093.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 08      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 5.6
(-3)
A 		13.5
(1.3)
A 		8.5
(-1.4)
A 		16.7
(3)
A 		11
B 9.5
(-2.5)
A 		8.9
(-3)
A 		15.7
(2.4)
A 		16.5
(3)
A 		8
C 12.3
(-2.3)
A 		7.8
(-3)
A 		14.4
(-2)
A 		48.8
(3)
A 		41
avr 9.1
(-3) 		10.1
(-2.7) 		12.9
(-1.7) 		27.3
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 5
(-3)
A 		19.4
(-0.8)
A 		38.4
(2)
A 		44.9
(3)
A 		19.5
(-0.8)
A 		17.6
(-1.1)
A 		40
B 12
(-1.5)
A 		16.1
(-0.5)
A 		30.8
(3)
A 		30.1
(2.8)
A 		17.7
(-0.1)
A 		5.5
(-3)
A 		25
C 6.4
(-3)
A 		18.1
(3)
A 		15.8
(1.8)
A 		14.2
(1)
A 		16.4
(2.1)
A 		11.9
(-0.2)
A 		12
avr 7.8
(-3) 		17.9
(-0.2) 		28.3
(2.6) 		29.7
(3) 		17.9
(-0.2) 		11.7
(-1.9) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2
(-3)
A 		2.9
(3)
A 		2.2
(-1.7)
A 		2.4
(-0.3)
A 		1
B 3
(0.4)
A 		2.2
(-3)
A 		3.6
(3)
A 		3.5
(2.6)
A 		1
C 4.1
(-1.1)
A 		2.2
(-3)
A 		5
(-0.2)
A 		8.2
(3)
A 		6
avr 3
(-1.4) 		2.4
(-3) 		3.6
(0.1) 		4.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.9
(-3)
A 		6.9
(0.4)
A 		8.4
(1.3)
A 		11.4
(3)
A 		5.9
(-0.1)
A 		4.3
(-1.1)
A 		11
B 4.2
(-0.9)
A 		5.4
(0.4)
A 		7.5
(2.5)
A 		8
(3)
A 		7.2
(2.2)
A 		2.1
(-3)
A 		6
C 2.4
(-3)
A 		5.5
(3)
A 		4
(0.1)
A 		2.9
(-2)
A 		5.3
(2.6)
A 		4
(0.1)
A 		3
avr 2.5
(-3) 		5.9
(1.2) 		6.6
(2) 		7.4
(3) 		6.1
(1.4) 		3.5
(-1.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184285_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14891
Sequence Type Exemplar sequence
Representative Public ID C04E12.7 NCBI
Target Description C04E12.7 /REP_DB=WormBase Gene ID /WP=CE16820 /TR=O76675 /GB=AAC27093.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071533(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071533 NCBI Caenorhabditis elegans C04E12.7 (C04E12.7) mRNA, complete cds. 11/11 None
SNAP00000029746 ENSEMBL cdna:SNAP chromosome:CEL140:V:3355806:3357019:-1 10/11 None
GENEFINDER00000029759 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3354730:3357019:-1 10/11 None
C04E12.7 ENSEMBL cdna:known chromosome:CEL140:V:3355751:3357019:-1 gene:C04E12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3355750-3357019(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04E12.7
Entrez Gene 182212 Entrez gene
SwissProt O76675 EMBL-EBI
WormBase CE16820 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC27093 Hypothetical protein C04E12.7 [Caenorhabditis elegans] ref|NP_503934.1| C04E12.7 [Caenorhabditis elegans] 1.0E-140
blast AAC27093 Hypothetical protein C04E12.7 [Caenorhabditis elegans] ref|NP_503934.1| C04E12.7 [Caenorhabditis elegans] 1.0E-134
blast CAB04981 Hypothetical protein ZK1053.5 [Caenorhabditis elegans] ref|NP_493321.1| ZK1053.5 [Caenorhabditis elegans] 1.0E-85
blast CAB04981 Hypothetical protein ZK1053.5 [Caenorhabditis elegans] ref|NP_493321.1| ZK1053.5 [Caenorhabditis elegans] 6.0E-83
blast CAB04981 Hypothetical protein ZK1053.5 [Caenorhabditis elegans] ref|NP_493321.1| ZK1053.5 [Caenorhabditis elegans] 1.0E-81
blast AAC27092 Hypothetical protein C04E12.6 [Caenorhabditis elegans] ref|NP_503933.1| C04E12.6 [Caenorhabditis elegans] 2.0E-65
blast CAB04754 Hypothetical protein T22H2.5b [Caenorhabditis elegans] ref|NP_492976.2| T22H2.5b [Caenorhabditis elegans] 5.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR005552 EMBL-EBI Scramblase 1.0E-126
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 4.9E-31
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 2.8E-43
Pfam IPR005552 EMBL-EBI Scramblase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:184285_AT
ggtgcatcaatttttggagcccatcgagattcgcactggctgggagaccaaaaataaata
tgctatcaaaaaaatatgctatcaaaagagacagtgctgtggagctgaacgtgcattcgt
catgcacattgtagataactttaacaaggaagtgctcaccgtcaaacgagaaagacactg
ctgtggatgctgttgctggttaggttcaacaaacaagagcacaattgaatccccatccat
gggccttctgggtactgttcttctaggacatggttgtacaaactcacactgtaacgttct
ggataaagatgaagaactgttgtttcttgttgatggtcaaggctgctgcacgtattgctg
ttgcgatgataaggctttcacgatcaaaactcccgatacctataagagaattggcgcaat
taccaagaagtggggtggtataatacgtgaggcgtatactgacgctgacacttttgccgt
cacatttcccgccgacctggatgtcaaggccaaagcattacttctggcaaccacgattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGCATCAATTTTTGGAGCCCATC 112 501 195 Antisense
GAGCCCATCGAGATTCGCACTGGCT 29 387 211 Antisense
GGAGCTGAACGTGCATTCGTCATGC 44 521 295 Antisense
GTGGATGCTGTTGCTGGTTAGGTTC 79 491 377 Antisense
AATTGAATCCCCATCCATGGGCCTT 328 177 417 Antisense
CTTCTGGGTACTGTTCTTCTAGGAC 415 219 439 Antisense
GTTGATGGTCAAGGCTGCTGCACGT 154 439 523 Antisense
GCTGCTGCACGTATTGCTGTTGCGA 559 297 536 Antisense
ATACTGACGCTGACACTTTTGCCGT 400 23 650 Antisense
CGCCGACCTGGATGTCAAGGCCAAA 129 257 684 Antisense
GCATTACTTCTGGCAACCACGATTT 699 305 709 Antisense
Sequence Source Affymetrix Proprietary Database