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[184283_at]

Description Y51H4A.25 /REP_DB=WormBase Gene ID /WP=CE25368 /TR=Q9TVP0 /GB=CAB63368.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 23      4grp_high_8_8 > 11      6grp_total > 13      4grp_total > 22      6grp_high1_sub > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 99.4
(3)
P 		52
(-1.1)
P 		29.2
(-3)
P 		86.6
(1.9)
A 		70
B 91.8
(1.1)
P 		55.3
(-1.6)
P 		35.7
(-3)
P 		118.3
(3)
P 		83
C 133
(1.1)
P 		73.2
(-3)
P 		73.4
(-3)
P 		159.7
(3)
P 		87
avr 108.1
(1.9) 		60.2
(-1.9) 		46.1
(-3) 		121.5
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 90.5
(0.5)
P 		100.2
(1.2)
P 		124.4
(3)
P 		90.1
(0.5)
P 		70
(-1)
P 		42.1
(-3)
P 		82
B 115.8
(2.7)
P 		121.7
(3)
P 		45.4
(-1.4)
P 		71.7
(0.1)
P 		17.9
(-3)
A 		48
(-1.3)
P 		104
C 89.4
(-0.1)
P 		138.8
(3)
P 		61.4
(-1.8)
P 		125.5
(2.2)
P 		45.4
(-2.8)
P 		42.1
(-3)
P 		97
avr 98.6
(1.3) 		120.2
(3) 		77.1
(-0.4) 		95.8
(1.1) 		44.4
(-3) 		44.1
(-3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 36.2
(3)
P 		11.3
(-2.2)
P 		7.6
(-3)
P 		12.7
(-1.9)
A 		29
B 29.3
(3)
P 		13.7
(-1.5)
P 		8.3
(-3)
P 		25.2
(1.8)
P 		21
C 44
(3)
P 		21
(-3)
P 		25.6
(-1.8)
P 		26.9
(-1.5)
P 		23
avr 36.5
(3) 		15.3
(-2.6) 		13.8
(-3) 		21.6
(-0.9) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 16.7
(-1.5)
P 		35.6
(3)
P 		27.1
(1)
P 		22.9
(-0)
P 		21.1
(-0.4)
P 		10.2
(-3)
P 		25
B 40.3
(3)
P 		40.5
(3)
P 		11
(-2.3)
P 		19
(-0.9)
P 		7.3
(-3)
A 		17.9
(-1.1)
P 		33
C 33.1
(1)
P 		42.4
(3)
P 		15.6
(-2.7)
P 		25.2
(-0.6)
P 		14.7
(-2.9)
P 		14.1
(-3)
P 		28
avr 30
(0.8) 		39.5
(3) 		17.9
(-2.1) 		22.4
(-1) 		14.4
(-2.9) 		14.1
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184283_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8389
Sequence Type Exemplar sequence
Representative Public ID Y51H4A.25 NCBI
Target Description Y51H4A.25 /REP_DB=WormBase Gene ID /WP=CE25368 /TR=Q9TVP0 /GB=CAB63368.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028310(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028310 NCBI Caenorhabditis elegans Y51H4A.25a (Y51H4A.25) mRNA, complete cds. 11/11 None
SNAP00000037215 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16741384:16743040:1 11/11 None
GENEFINDER00000037226 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16741384:16743040:1 11/11 None
Y51H4A.25a ENSEMBL cdna:known chromosome:CEL140:IV:16736288:16743047:1 gene:Y51H4A.25 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
190159 2 1 NM_001028310 184283_at (11), 184284_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16740136-16743046(+) 100.0 100.0
chrIV:17308485-17311656(+) 95.78 95.78
Public Domain and Genome References
Ensembl Y51H4A.25
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63388 Hypothetical protein Y51H4A.25a [Caenorhabditis elegans] emb|CAB63368.1| Hypothetical protein Y51H4A.25a [Caenorhabditis elegans] ref|NP_001023481.1| Y51H4A.25a [Caenorhabditis elegans] 0.0
blast CAB05303 Hypothetical protein T28F3.9 [Caenorhabditis elegans] emb|CAB05168.1| Hypothetical protein T28F3.9 [Caenorhabditis elegans] ref|NP_503076.1| T28F3.9 [Caenorhabditis elegans] 0.0
blast CAE61764 Hypothetical protein CBG05724 [Caenorhabditis briggsae] 1.0E-156
Protein Domains
Database ID Description E-Value
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 4.7E-78
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 4.7E-78
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023481.1 1 46-68
Y51H4A.25a 1 46-68
Sequence
Target Sequence 
>C. ELEGANS:184283_AT
gtggatatgtacaagcttcattgtcaagagcagctgttgaatggttaatcaatacagtgg
atttaacattattcatcaaccagtttgatcgaacgaaatatggtggagacgagcagctga
tttccagttttcaagtgaattcacaatttgaaatgcctggacactttacggacgagtgtt
ccaaatatcgttacgggcatgatcaaatctcaagaatgactcaatgggctggtggtgatg
taaaaaggtgtgcctcaaaaaccatacgtcatgggatttgtctcatcggaattgaagatt
tcagagctgtttctgaaatgccagttattatgttcaataagatgttgccatcgtttgact
actccataattgattgcacagctgaacttcttttcaatcgaacgttcctgaatcagaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGATATGTACAAGCTTCATTGTC 662 489 1004 Antisense
TGTACAAGCTTCATTGTCAAGAGCA 634 557 1011 Antisense
AGAATGACTCAATGGGCTGGTGGTG 696 73 1216 Antisense
GACTCAATGGGCTGGTGGTGATGTA 607 373 1221 Antisense
GAAATGCCAGTTATTATGTTCAATA 610 361 1318 Antisense
AGATGTTGCCATCGTTTGACTACTC 414 67 1343 Antisense
CCATCGTTTGACTACTCCATAATTG 372 271 1351 Antisense
GACTACTCCATAATTGATTGCACAG 467 373 1360 Antisense
TGATTGCACAGCTGAACTTCTTTTC 89 565 1374 Antisense
ACTTCTTTTCAATCGAACGTTCCTG 320 95 1389 Antisense
CAATCGAACGTTCCTGAATCAGACA 384 179 1398 Antisense
Sequence Source Affymetrix Proprietary Database