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[184281_at]

Description C13F10.2 /REP_DB=WormBase Gene ID /WP=CE08144 /TR=O01488 /GB=AAC47964.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 84      4grp_highest_8_8 > 07      4grp_high_8_8 > 20      6grp_highest_nonorm > 81      6grp_total > 75      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 300
1 2 3 4 range
A 249.2
(-2.4)
P 		287.7
(-1.3)
P 		226.2
(-3)
P 		447.8
(3)
P 		222
B 277.6
(-3)
P 		433.8
(3)
P 		299.5
(-2.2)
P 		367
(0.4)
P 		156
C 280.2
(-0.9)
P 		333.7
(0.2)
P 		172.8
(-3)
P 		473.1
(3)
P 		300
avr 269
(-1.9) 		351.7
(0.6) 		232.8
(-3) 		429.3
(3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 265.2
(-1.5)
P 		224.4
(-3)
P 		257.6
(-1.8)
P 		368.9
(2.3)
P 		284.6
(-0.8)
P 		387.7
(3)
P 		163
B 180.5
(-3)
P 		303.5
(1.5)
P 		266.4
(0.2)
P 		328.7
(2.4)
P 		280.1
(0.7)
P 		343.9
(3)
P 		163
C 198.5
(-3)
P 		317.7
(0.7)
P 		338.1
(1.3)
P 		340.5
(1.4)
P 		273.3
(-0.7)
P 		392.1
(3)
P 		194
avr 214.7
(-3) 		281.9
(-0.5) 		287.4
(-0.3) 		346
(1.9) 		279.3
(-0.6) 		374.6
(3) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 90.7
(3)
P 		62.5
(-2.4)
P 		59.1
(-3)
P 		65.6
(-1.8)
P 		32
B 88.5
(0)
P 		107.1
(3)
P 		69.4
(-3)
P 		78.2
(-1.6)
P 		38
C 92.8
(2.5)
P 		95.9
(3)
P 		60.2
(-3)
P 		79.8
(0.3)
P 		36
avr 90.7
(3) 		88.5
(2.5) 		62.9
(-3) 		74.5
(-0.5) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 48.9
(-3)
P 		79.8
(1.1)
P 		56.1
(-2.1)
P 		93.6
(2.9)
P 		85.9
(1.9)
P 		94.4
(3)
P 		46
B 62.8
(-3)
P 		101
(0.5)
P 		64.7
(-2.8)
P 		87.1
(-0.8)
P 		113.8
(1.7)
P 		128.2
(3)
P 		65
C 73.6
(-2.5)
P 		97
(-0.3)
P 		86
(-1.3)
P 		68.5
(-3)
P 		88.4
(-1.1)
P 		131.2
(3)
P 		63
avr 61.8
(-3) 		92.6
(0.3) 		68.9
(-2.2) 		83.1
(-0.7) 		96
(0.7) 		117.9
(3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184281_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11829
Sequence Type Exemplar sequence
Representative Public ID C13F10.2 NCBI
Target Description C13F10.2 /REP_DB=WormBase Gene ID /WP=CE08144 /TR=O01488 /GB=AAC47964.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072430(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072430 NCBI Caenorhabditis elegans C13F10.2 (C13F10.2) mRNA, complete cds. 11/11 None
SNAP00000004760 ENSEMBL cdna:SNAP chromosome:CEL140:V:7224072:7224650:1 11/11 None
GENEFINDER00000004764 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7224072:7224650:1 11/11 None
C13F10.2 ENSEMBL cdna:known chromosome:CEL140:V:7224072:7224650:1 gene:C13F10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7224072-7224651(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C13F10.2
Entrez Gene 182578 Entrez gene
SwissProt O01488 EMBL-EBI
WormBase CE08144 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47964 Hypothetical protein C13F10.2 [Caenorhabditis elegans] ref|NP_504831.1| C13F10.2 [Caenorhabditis elegans] 1.0E-74
blast CAE72023 Hypothetical protein CBG19105 [Caenorhabditis briggsae] 8.0E-62
blast AAF49911 CG10681-PA [Drosophila melanogaster] gb|AAO49166.1| GM01172p [Drosophila melanogaster] ref|NP_648580.1| CG10681-PA [Drosophila melanogaster] 5.0E-18
Sequence
Target Sequence 
>C. ELEGANS:184281_AT
caacaagaacgactacctggcaacccgtttttcccatcaagaagcaacgctggctcttca
tttgacatgcccgaaacaccacatctcatcgattcgctcacttctcaaatcgacgaattc
acaattcaaagcataattgatactcagagacagagcttgaaacgcttcgaaaagacaaat
gaaatgctcatgaattgcgctcaactcggcgatcgaagaattgaaaaagcaaaaagggat
tctgtgggacaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACAAGAACGACTACCTGGCAACC 82 189 34 Antisense
GTTTTTCCCATCAAGAAGCAACGCT 403 447 60 Antisense
AGAAGCAACGCTGGCTCTTCATTTG 252 75 73 Antisense
GCTGGCTCTTCATTTGACATGCCCG 184 295 82 Antisense
ATTTGACATGCCCGAAACACCACAT 618 17 93 Antisense
CGAAACACCACATCTCATCGATTCG 20 253 105 Antisense
ATTCGCTCACTTCTCAAATCGACGA 443 9 125 Antisense
GAGACAGAGCTTGAAACGCTTCGAA 354 393 180 Antisense
AATGCTCATGAATTGCGCTCAACTC 7 167 216 Antisense
TTGCGCTCAACTCGGCGATCGAAGA 640 699 228 Antisense
GCAAAAAGGGATTCTGTGGGACACA 651 317 262 Antisense
Sequence Source Affymetrix Proprietary Database