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[184280_at]

Description C16C8.18 /REP_DB=WormBase Gene ID /WP=CE08229 /TR=P91061 /GB=AAB37864.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 56      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 20
(-0.3)
A 		7.2
(-2.3)
A 		40.9
(3)
A 		2.9
(-3)
A 		38
B 22.4
(-0.6)
A 		30.2
(1)
A 		10.5
(-3)
A 		40.4
(3)
A 		30
C 15.2
(-0.5)
A 		7.2
(-2.6)
A 		29
(3)
A 		5.5
(-3)
A 		24
avr 19.2
(-0.8) 		14.9
(-3) 		26.8
(3) 		16.3
(-2.3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 6.6
(-2.8)
A 		2.2
(-3)
A 		9.5
(-2.7)
A 		20
(-2.2)
A 		60.2
(-0.3)
A 		133.1
(3)
P 		131
B 3.3
(-3)
A 		22.8
(-2.1)
A 		4.8
(-2.9)
A 		48.5
(-0.9)
A 		73
(0.2)
P 		134.4
(3)
P 		131
C 15.9
(-2.7)
A 		25.7
(-2.2)
A 		13.6
(-2.9)
A 		10.7
(-3)
A 		89.4
(1.1)
M 		127.1
(3)
P 		116
avr 8.6
(-3) 		16.9
(-2.6) 		9.3
(-3) 		26.4
(-2.1) 		74.2
(0.2) 		131.5
(3) 		123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 7.3
(1)
A 		1.6
(-2.3)
A 		10.7
(3)
A 		0.4
(-3)
A 		10
B 7.1
(1.5)
A 		7.5
(1.9)
A 		2.4
(-3)
A 		8.6
(3)
A 		6
C 5
(-0.3)
A 		2.1
(-2.2)
A 		10.1
(3)
A 		0.9
(-3)
A 		9
avr 6.5
(1.4) 		3.7
(-2.5) 		7.7
(3) 		3.3
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 1.2
(-2.9)
A 		0.8
(-3)
A 		2.1
(-2.8)
A 		5.1
(-2.2)
A 		18.2
(0.3)
A 		32.4
(3)
P 		32
B 1.1
(-3)
A 		7.6
(-2.2)
A 		1.2
(-3)
A 		12.8
(-1.6)
A 		29.7
(0.5)
P 		50.1
(3)
P 		49
C 5.9
(-2.5)
A 		7.8
(-2.2)
A 		3.5
(-2.8)
A 		2.2
(-3)
A 		28.9
(1)
M 		42.6
(3)
P 		40
avr 2.7
(-2.9) 		5.4
(-2.5) 		2.3
(-3) 		6.7
(-2.3) 		25.6
(0.5) 		41.7
(3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184280_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5101
Sequence Type Exemplar sequence
Representative Public ID C16C8.18 NCBI
Target Description C16C8.18 /REP_DB=WormBase Gene ID /WP=CE08229 /TR=P91061 /GB=AAB37864.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062138(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062138 NCBI Caenorhabditis elegans C16C8.18 (C16C8.18) mRNA, complete cds. 11/11 None
SNAP00000014770 ENSEMBL cdna:SNAP chromosome:CEL140:II:3429755:3431228:1 11/11 None
GENEFINDER00000014805 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3429401:3431228:1 11/11 None
C16C8.18 ENSEMBL cdna:known chromosome:CEL140:II:3429401:3431228:1 gene:C16C8.18 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3429399-3431227(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C8.18
Entrez Gene 182680 Entrez gene
SwissProt P91061 EMBL-EBI
WormBase CE08229 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37864 Hypothetical protein C16C8.18 [Caenorhabditis elegans] ref|NP_494539.1| C16C8.18 [Caenorhabditis elegans] 1.0E-136
blast AAB37864 Hypothetical protein C16C8.18 [Caenorhabditis elegans] ref|NP_494539.1| C16C8.18 [Caenorhabditis elegans] 1.0E-116
blast CAE69490 Hypothetical protein CBG15695 [Caenorhabditis briggsae] 4.0E-98
blast CAE69490 Hypothetical protein CBG15695 [Caenorhabditis briggsae] 1.0E-96
blast AAK85491 Hypothetical protein R13H9.1 [Caenorhabditis elegans] ref|NP_500717.1| R13H9.1 [Caenorhabditis elegans] 3.0E-17
Sequence
Target Sequence 
>C. ELEGANS:184280_AT
gagagtgttccggcggagcatcgttgtgggctcttgagacgtcacgctgagtatctctac
atgatgagcgactatcagacgttgaaggagaagcgtgtggagatgttggagagtgcttac
aacaaggctcgtcaaggacatctgacggatcccggcaatttcgaatgcgcaaaggtcttg
tgctccacttgtggacggctcgccgaggaaagctctctcaagaagaagctcgactacgga
ttcaagttcaagacctatttggatgaagccattgcaatctatgatcaggactttgagctg
actcacatgagaggacggttctgttatacggtggcctcgctttcgtttgtcgaacgttgt
gctgcgaaggtgattgggcagattccggattgcacctaccaaatggctctggacgatctc
ctgagagctgatcaactcgaggagaatatcgctgagaatcagtttttcattggaaaaact
tacatggctatgggagatcttgtcaacgcgaagagatggcttcaaaggaccgctgccaac
actaccgaggtgccagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGTGTTCCGGCGGAGCATCGTT 441 395 199 Antisense
CGTTGTGGGCTCTTGAGACGTCACG 581 247 220 Antisense
GACGTCACGCTGAGTATCTCTACAT 68 379 236 Antisense
GGATCCCGGCAATTTCGAATGCGCA 591 511 345 Antisense
ATGCGCAAAGGTCTTGTGCTCCACT 602 41 363 Antisense
GACGGTTCTGTTATACGGTGGCCTC 168 377 512 Antisense
GGATTGCACCTACCAAATGGCTCTG 289 507 585 Antisense
CAAATGGCTCTGGACGATCTCCTGA 96 193 598 Antisense
GGCTATGGGAGATCTTGTCAACGCG 560 537 684 Antisense
GAGATGGCTTCAAAGGACCGCTGCC 48 397 711 Antisense
TGCCAACACTACCGAGGTGCCAGTT 293 585 732 Antisense
Sequence Source Affymetrix Proprietary Database