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[184279_at]

Description Y17G9B.5 /REP_DB=WormBase Gene ID /WP=CE24184 /TR=Q9N580 /GB=AAF60446.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 85      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 84      6grp_total > 76      4grp_total > 02      6grp_highest_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 854
1 2 3 4 range
A 518.7
(-3)
P 		621.3
(-1.9)
P 		564
(-2.5)
P 		1093
(3)
P 		574
B 574
(-3)
P 		577.4
(-3)
P 		620
(-2.7)
P 		1372.5
(3)
P 		799
C 722.7
(-1.4)
P 		592.8
(-2.9)
P 		586.5
(-3)
P 		1100.9
(3)
P 		514
avr 605.1
(-2.9) 		597.2
(-2.9) 		590.2
(-3) 		1188.8
(3) 		599

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 428
1 2 3 4 5 6 range
A 447.2
(-3)
P 		620.6
(-0.6)
P 		616.6
(-0.6)
P 		587.9
(-1)
P 		663.3
(0)
P 		874.8
(3)
P 		428
B 461
(-3)
P 		522.2
(-2)
P 		706.3
(1.1)
P 		696.6
(1)
P 		684.7
(0.8)
P 		817.6
(3)
P 		357
C 482.6
(-3)
P 		630.3
(0.3)
P 		666.1
(1.1)
P 		533
(-1.9)
P 		527
(-2)
P 		749.5
(3)
P 		267
avr 463.6
(-3) 		591
(-0.8) 		663
(0.4) 		605.8
(-0.6) 		625
(-0.2) 		814
(3) 		350
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 188.9
(3)
P 		134.9
(-3)
P 		147.4
(-1.6)
P 		160
(-0.2)
P 		54
B 183
(-1.4)
P 		142.6
(-3)
P 		143.7
(-3)
P 		292.5
(3)
P 		150
C 239.2
(3)
P 		170.4
(-3)
P 		204.4
(-0)
P 		185.6
(-1.7)
P 		69
avr 203.7
(2.1) 		149.3
(-3) 		165.2
(-1.5) 		212.7
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 82.4
(-3)
P 		220.7
(3)
P 		134.3
(-0.7)
P 		149.1
(-0.1)
P 		200.2
(2.1)
P 		213
(2.7)
P 		138
B 160.4
(-3)
P 		173.8
(-2.4)
P 		171.5
(-2.5)
P 		184.5
(-2)
P 		278.2
(1.9)
P 		304.9
(3)
P 		145
C 178.9
(-0)
P 		192.3
(0.6)
P 		169.5
(-0.4)
P 		107.2
(-3)
P 		170.5
(-0.4)
P 		250.9
(3)
P 		144
avr 140.6
(-3) 		195.6
(-0.1) 		158.4
(-2.1) 		146.9
(-2.7) 		216.3
(0.9) 		256.3
(3) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184279_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10372
Sequence Type Exemplar sequence
Representative Public ID Y17G9B.5 NCBI
Target Description Y17G9B.5 /REP_DB=WormBase Gene ID /WP=CE24184 /TR=Q9N580 /GB=AAF60446.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068230(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068230 NCBI Caenorhabditis elegans Y17G9B.5 (Y17G9B.5) mRNA, complete cds. 11/11 None
SNAP00000043794 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4750231:4751431:1 11/11 None
GENEFINDER00000043812 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4750237:4751431:1 11/11 None
Y17G9B.5 ENSEMBL cdna:known chromosome:CEL140:IV:4750231:4751431:1 gene:Y17G9B.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4750242-4751437(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y17G9B.5
Entrez Gene 177244 Entrez gene
SwissProt Q9N580 EMBL-EBI
WormBase CE24184 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.17778.1.S1_S_AT similar to evolutionarily conserved signaling intermediate in Toll pathway cfa
CANINE_2:CFAAFFX.26520.1.S1_AT similar to evolutionarily conserved signaling intermediate in Toll pathway cfa
DROSOPHILA_2:1634592_AT dm
DROSGENOME1:144214_AT dm
HG-U133_PLUS_2:218225_AT signaling intermediate in Toll pathway, evolutionarily conserved hs
HG-U133A:218225_AT signaling intermediate in Toll pathway, evolutionarily conserved hs
HG-U133A_2:218225_AT signaling intermediate in Toll pathway, evolutionarily conserved hs
HU35KSUBA:RC_AA255480_AT signaling intermediate in Toll pathway, evolutionarily conserved hs
U133_X3P:G7706114_3P_AT signaling intermediate in Toll pathway, evolutionarily conserved hs
HG-U95C:49013_AT signaling intermediate in Toll pathway, evolutionarily conserved hs
MOUSE430_2:1417080_A_AT signaling intermediate in Toll pathway-evolutionarily conserved mm
MOE430A:1417080_A_AT signaling intermediate in Toll pathway-evolutionarily conserved mm
MOUSE430A_2:1417080_A_AT signaling intermediate in Toll pathway-evolutionarily conserved mm
MG-U74BV2:109780_AT signaling intermediate in Toll pathway-evolutionarily conserved mm
MU19KSUBA:TC22148_AT Signaling intermediate in Toll pathway-evolutionarily conserved, mRNA (cDNA clone MGC:25219 IMAGE:4924678) mm
MU19KSUBB:TC28256_AT Signaling intermediate in Toll pathway-evolutionarily conserved, mRNA (cDNA clone MGC:25219 IMAGE:4924678) mm
RG-U34C:RC_AI175479_AT evolutionarily conserved signaling intermediate in Toll pathway rn
RAE230A:1373420_AT evolutionarily conserved signaling intermediate in Toll pathway rn
RAT230_2:1373420_AT evolutionarily conserved signaling intermediate in Toll pathway rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_500631 Y17G9B.5 [Caenorhabditis elegans] gb|AAF60446.1| Hypothetical protein Y17G9B.5 [Caenorhabditis elegans] 0.0
blast CAE58580 Hypothetical protein CBG01746 [Caenorhabditis briggsae] 1.0E-156
blast EAA04813 ENSANGP00000019534 [Anopheles gambiae str. PEST] ref|XP_309087.2| ENSANGP00000019534 [Anopheles gambiae str. PEST] 9.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR010418 EMBL-EBI ECSIT 1.0E-126
Pfam IPR010418 EMBL-EBI ECSIT 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:184279_AT
gaagcgtatgctctattggatgccaaagctgaaacattcgaataaatatctggacaggcg
ccacgtggaagggaagtctctatcaccctccgagttagccggaatcgcgctgaaaatgat
gagccgagacgctgcgtcctctatttcgcttctaaaactgtcagattcatcagatccaca
acaaaaatggctagccacgtcacagagcccaatgcaacagatattaatttctgaattgcg
aaaaggtgatgaagtcttcgtggatgctgcaaaagtctatctacaagacagagttattcc
atttatcacattaactggaaatacgaagctggaacctttaaacgagttcaaaaacgaaga
tatggacgaagattatacaaattggtacgcggactggcagaagcaaagaggagaagctaa
aagatcgatccacgaacaagaccacgaaacgattttcgcaatgggtgctatgtataaaga
tgataatgcaacagcgattcgatggattgataatctacaaaaaaccaacccaaatatgga
gaacctgaggttccgagttcgattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCGTATGCTCTATTGGATGCCA 202 343 471 Antisense
AAATATCTGGACAGGCGCCACGTGG 613 115 514 Antisense
GGAAGGGAAGTCTCTATCACCCTCC 270 481 537 Antisense
ATCACCCTCCGAGTTAGCCGGAATC 210 23 552 Antisense
AAATGATGAGCCGAGACGCTGCGTC 43 121 584 Antisense
GCGTCCTCTATTTCGCTTCTAAAAC 629 289 604 Antisense
AACTGTCAGATTCATCAGATCCACA 38 143 626 Antisense
CACGTCACAGAGCCCAATGCAACAG 648 199 666 Antisense
GATGAAGTCTTCGTGGATGCTGCAA 306 413 718 Antisense
ACAGAGTTATTCCATTTATCACATT 276 109 758 Antisense
GAACCTGAGGTTCCGAGTTCGATTG 92 343 1011 Antisense
Sequence Source Affymetrix Proprietary Database